Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01502 ATGTCTTTCACGGCCACCGCAAATGGAGTTCCGTCGAACTCCACGGTGGCAATGATGTTGGGCCGACGAAGAATTCCGATACACACGTCATTCTATTGGGGTCATAAAGTTGATATACTATTCCATTGCTGGCCCGGGAACAGCGCCGCTATGTATGCGGTGGCGCTGATCCTGGTGTTCGTAATGGCATTGCTTGTGGAGTGGCTTTCATTCACTAACATTGTTAAACTCAAACCTGGAACATCAAACGAGGTTGTTGGGTCACTTTTAAGGACGGGGTTGTACGGTGTCCGTACTGCATTCTCGTACTTGGTTATGTTGGCTGTTATGTCGTTTAATGGTGGCGTGTTTCTCGCCGCGATTTTCGGCCACGTCATTGGGTTTATGGTATTTGGTACTATGGCTGTGATAAAGAAATCTGGTGGGTTGGATTCTTCCAAACCGCAGAGTGTGTTTGTTTGA 462 0.4762 MSFTATANGVPSNSTVAMMLGRRRIPIHTSFYWGHKVDILFHCWPGNSAAMYAVALILVFVMALLVEWLSFTNIVKLKPGTSNEVVGSLLRTGLYGVRTAFSYLVMLAVMSFNGGVFLAAIFGHVIGFMVFGTMAVIKKSGGLDSSKPQSVFV 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01502 153 Pfam Ctr copper transporter family 85 131 IPR007274 GO:0005375|GO:0016020|GO:0035434
Trre13g01502 153 Pfam Ctr copper transporter family 30 72 IPR007274 GO:0005375|GO:0016020|GO:0035434
Trre13g01502 153 PANTHER SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 26 134 IPR007274 GO:0005375|GO:0016020|GO:0035434
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01502 Trre-Chr13 12164949 12165410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01502 30 151 Inorganic Solute Cotransporters AT5G59030 44.262 1.64e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01502 K14686 - gmx:100803410 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01502 13 12164949 12165410 Trre13g01502 13 12164949 12165410 ECH