Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01500 ATGGGTGGTGTTGCATGGACAGAAGAAGAAGATCATTTGCTTAAGAAATGCACACAACAATATGGTGAAGGAAAGTGGCATCGAGTTCCTCTATTGGCAGGTCTAAACAGATGCCGAAAGAGTTGTAGGCTAAGATGGTTGAACTATCTCCGTCCTAACATCAAGAGAGGAAATTTTGCTGAGGAGGAAGTTGAAATGATTGTCAAACTACACAAATTATTAGGCAACAGATGGTCCCTAATTGCAGGAAGGCTACCAGGAAGGACAGCAAATGATGTGAAAAACTATTGGAATTGTCATCTAAGCAAAAGAGTAAATGCTCTAGAAGCTGATCAAGATGGATCACAATTATCAAAAGATGTTCAAATCATTATGCCACAGCCAAGAAACAATGGTTCAAGCTCAACAATGAAGAGAAGGAGCCAAGGAGAGTCACCAAGTAATCAAGTTTTAGTTGAACAAGAGAGTGACATGACAAAATTTGATGCTGATGGAAAGAACAATATGATTGAATCACAACAAGACATGATGATGTATTCATGCTTGGATCAACAAGGTATGTTTAGTGAGTTTCCAATGGACTTTCAATTAGAAGGATTTGAAGCTATGGTAAGTGGAGGAGAAAGTAGTAGTAGCCAATGGAATTGGGATAATTTGCTCTTAGATATGGATATGTATAATGATTTTTCTTCTTAG 696 0.3779 MGGVAWTEEEDHLLKKCTQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIKRGNFAEEEVEMIVKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKRVNALEADQDGSQLSKDVQIIMPQPRNNGSSSTMKRRSQGESPSNQVLVEQESDMTKFDADGKNNMIESQQDMMMYSCLDQQGMFSEFPMDFQLEGFEAMVSGGESSSSQWNWDNLLLDMDMYNDFSS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01500 231 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Trre13g01500 231 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Trre13g01500 231 SMART sant 55 103 IPR001005 -
Trre13g01500 231 SMART sant 2 52 IPR001005 -
Trre13g01500 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Trre13g01500 231 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 166 - -
Trre13g01500 231 FunFam Myb transcription factor 3 55 - -
Trre13g01500 231 Gene3D - 4 55 - -
Trre13g01500 231 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Trre13g01500 231 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Trre13g01500 231 Gene3D - 57 122 - -
Trre13g01500 231 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Trre13g01500 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Trre13g01500 231 MobiDBLite consensus disorder prediction 125 149 - -
Trre13g01500 231 CDD SANT 58 101 IPR001005 -
Trre13g01500 231 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01500 Trre-Chr13 12155211 12157578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01500 5 202 MYB Transcription Factor Family AT1G66370 43.578 1.17e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g01500 Myb_DNA-binding 9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01500 K09422 - gmx:100809746 339.732