Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01496 ATGGCTACAAATCATGAAGAGGTGAAACTTTTGGGAGTTGATGGAAGCCCATTTGTGTTTTATAAAAAAGTTCCAGTTTTTGTTCACAACGAAAATCCCATCTCAGAATCCCTTGTGATTCTTGAGTATATTGATGAAACATGGAAACAAAATCCCATCTTTCCTTCTAATCCATACCAAAGAGCCTTAGCTCGATTTTGGTCAAAGTTCATCGACGACAAGATTGTGGCTGCTACCGTTAAAGTTATTCATATCGTTGATGATGAGAAAGAGCGCGAGAAGAATGTTGAGGAATCAATTGAGGCTTTACAGATTCTTGAGAATGAGTTGAAGGACAAGTTTTTTGGAGGAGAAGAGATTGGTATTGTGGATATTGCTGCTGTTTTTATAGCTTTTTGGCTTCCTTTGATTCAAGACATAAAAAGGTTGCAATTTGTGACTGTTGAAAAGTTTCCAAAACTTTACAATTGGAGTCAAGAATTTCTCAACCATCCAATTGTTAAGGAAAATATCCCTCCTAGAGACCCTCTTTTTGCCTCCTACAAAGCTTACTATGATAGCCTCATTGCTTCAAAATAG 579 0.3696 MATNHEEVKLLGVDGSPFVFYKKVPVFVHNENPISESLVILEYIDETWKQNPIFPSNPYQRALARFWSKFIDDKIVAATVKVIHIVDDEKEREKNVEESIEALQILENELKDKFFGGEEIGIVDIAAVFIAFWLPLIQDIKRLQFVTVEKFPKLYNWSQEFLNHPIVKENIPPRDPLFASYKAYYDSLIASK 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01496 192 SUPERFAMILY Thioredoxin-like 20 52 IPR036249 -
Trre13g01496 192 Gene3D Glutaredoxin 19 56 - -
Trre13g01496 192 FunFam Tau class glutathione S-transferase 54 191 - -
Trre13g01496 192 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 52 IPR004045 -
Trre13g01496 192 Pfam Glutathione S-transferase, C-terminal domain 81 165 IPR004046 -
Trre13g01496 192 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 57 185 IPR010987 -
Trre13g01496 192 Coils Coil 86 113 - -
Trre13g01496 192 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 21 175 IPR045073 -
Trre13g01496 192 CDD GST_C_Tau 58 184 IPR045074 GO:0004364|GO:0006749
Trre13g01496 192 Gene3D - 57 192 - -
Trre13g01496 192 Pfam Glutathione S-transferase, N-terminal domain 21 46 IPR004045 -
Trre13g01496 192 SUPERFAMILY GST C-terminal domain-like 46 186 IPR036282 -
Trre13g01496 192 SFLD Glutathione Transferase (cytosolic) 21 190 IPR040079 -
Trre13g01496 192 SFLD Main.3: Omega- and Tau-like 21 190 IPR045073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01496 Trre-Chr13 12085159 12085932 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01496 4 191 Glutathione S-transferase Gene Family AT3G09270 41.964 1.54e-54 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01496 K00799 - gmx:547578 268.47