Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01466 ATGGCTGAGGAGGGTTTTGAACATTACCATATTCCACAACAAAGCAGAAGAGAAAAGCTTAGATTTTTACCTCAAAATCAACCAAATTTCATTGAATCTTCAACAACCCTTCATCCAAATTATCCACCTTTACCTTCTCCCTACGACCCTTCACTCATTTCTTCTATTTTCTTATCTTCAACCAACCAAAACCACACTATTATGAATAATACTAACCCTTTACTTTATCAACAACAAAACCTTCGTGAATTCAACCATAGTTACACTGATGTTGGTAGTAGTAACAACAGTGAAGTAATGTTGTTAAAGTCTGAACCTTTATCTTTATCTTTATCATCTCACAAAAACAACCAGAATCAGAATCAGATGAATATTCATCATCCTGGTTCTGTTGTTGATGTTTCAAGGAACACAGTTCCATTAGGACCATTTACTGGTTATGCTTCTGTTTTGAAAGGATCAAGGTTTTTGAAACCTGCTCAACAATTATTAGATGAGATATGTTATGTTGGAGTTCGTGCTGATGAGAAAATTGTTACTGCTGTTGATGCATCTTTGATATTGGAAAATTATTATGATCAGGAAAGTAATGAAACTGTTAATGGTGTTGATGATACTCTTGGTGATGGAAATAATGAGGGTAGGAAGAACAAGTCTAGATTGTTAACTGTGCTTGATGAGATTTGCAGGAGGTACAGACAGTACTATCAGCAGATTCATGCAGTAATAACTTCGTTTGAATATGTTGCCGGTCTTGGTAATGCAGCACCGTATGCTACTTTGGCTATAAATGCCATGTCCAAACACTTTAGGTGCTTGAAGAATGTGATTACTGACCAGCTTCAGTTTATAAGTAAGTCCAATTTTCAGATAAGCAATAGAAAGGATGAATCTTCAAGGTTTTGTAACGGTGATGGAGCCCTTTACAGCCAAAGACCAGGGTTTTTAGAGCACGTCCAACAACCTGTTTGGCGACCTCAAAGAGGACTCCCCGAGCGCGCTGTGAGTGTTCTCAAGGCATGGTTGTTTGAACATTTTCTGCATCCTTATCCTACTGATACTGACAAGCTAATGTTGGCTAAACAAACCGGTCTATCTCGTAACCAGGTATCTAATTGGTTTATAAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAGGAAATACATATGCTTGAATCACAACAATCTCAAAAGGAACCATCACAAAGAGAAGAACATAGTAGGAACAATTTAAGTGATAACAACATTGCTGATCAGAATCCATCTTCATCCACAGACATATTTCACGATGTCGCATATAAACGAACTAGAAACGAACTTCACAATATGCCGGTGCTGAATCAACAAGTTGGTAATGTTGGAGTGAGCGTTATGAATAACGGCGCAACAAGCAATGGCGTATCTCTAACACTTGGCCTTCATCAAAATCATGGAATGGGGTTATCTGATCAACGATTCGACATGAGCGCTGCACGGCGTTTTGGTCTTGGACTTCAACCTGATAGCTACGTCATGAGTGGTTTTCAGTTACAGAATAGACAATTCGGGAGAGATTTTATCAGCGGGCAACTTTTGCATGACTTTGTAGGATGA 1596 0.3853 MAEEGFEHYHIPQQSRREKLRFLPQNQPNFIESSTTLHPNYPPLPSPYDPSLISSIFLSSTNQNHTIMNNTNPLLYQQQNLREFNHSYTDVGSSNNSEVMLLKSEPLSLSLSSHKNNQNQNQMNIHHPGSVVDVSRNTVPLGPFTGYASVLKGSRFLKPAQQLLDEICYVGVRADEKIVTAVDASLILENYYDQESNETVNGVDDTLGDGNNEGRKNKSRLLTVLDEICRRYRQYYQQIHAVITSFEYVAGLGNAAPYATLAINAMSKHFRCLKNVITDQLQFISKSNFQISNRKDESSRFCNGDGALYSQRPGFLEHVQQPVWRPQRGLPERAVSVLKAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQSQKEPSQREEHSRNNLSDNNIADQNPSSSTDIFHDVAYKRTRNELHNMPVLNQQVGNVGVSVMNNGATSNGVSLTLGLHQNHGMGLSDQRFDMSAARRFGLGLQPDSYVMSGFQLQNRQFGRDFISGQLLHDFVG 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01466 531 Pfam Associated with HOX 150 278 IPR006563 -
Trre13g01466 531 SMART prehox3 145 279 IPR006563 -
Trre13g01466 531 CDD homeodomain 324 385 IPR001356 GO:0003677
Trre13g01466 531 ProSiteProfiles 'Homeobox' domain profile. 321 384 IPR001356 GO:0003677
Trre13g01466 531 FunFam BEL1-like homeodomain protein 9 327 389 - -
Trre13g01466 531 MobiDBLite consensus disorder prediction 393 425 - -
Trre13g01466 531 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 80 405 - -
Trre13g01466 531 SUPERFAMILY Homeodomain-like 326 391 IPR009057 -
Trre13g01466 531 Pfam Homeobox KN domain 341 380 IPR008422 GO:0003677|GO:0006355
Trre13g01466 531 Gene3D - 327 389 - -
Trre13g01466 531 SMART HOX_1 324 388 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01466 Trre-Chr13 11866270 11870689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01466 85 531 Homeobox Transcription Factor Family AT5G02030 47.410 1.36e-114 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre13g01466 POX 2.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01466 - - mtr:11409415 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01466 13 11866270 11870689 Trre13g01466 13 11866270 11870689 ECH