Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01461 ATGGTCTTTGTGGGAAATGGAATCCCTGAAACTGAATTTTGGGAACTTTCAACTACAGTGGATCCTGATCCGTCTTTGTGTAAGCCCAATAAAGGAAGTGGAGAATTAACAGTTCCCTCAGGATTCAGGTTCCACCCCACTGATGAGGAGCTTCTTTACTATTATTTAAGGAGGAATGTTTCTTATGACGCCATTGATCTTGATGTTATTAGAGAAGTTGATCTAAATAGACTTGAGCCTTGGGATCTCAAAGGCAGGAATTGGTATAGCAGAGCTAATTGCTCTTTAGATATCAAAACAGACTAA 306 0.3954 MVFVGNGIPETEFWELSTTVDPDPSLCKPNKGSGELTVPSGFRFHPTDEELLYYYLRRNVSYDAIDLDVIREVDLNRLEPWDLKGRNWYSRANCSLDIKTD 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01461 101 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 38 90 - -
Trre13g01461 101 Gene3D NAC domain 47 95 IPR036093 GO:0003677|GO:0006355
Trre13g01461 101 SUPERFAMILY NAC domain 34 89 IPR036093 GO:0003677|GO:0006355
Trre13g01461 101 ProSiteProfiles NAC domain profile. 38 101 IPR003441 GO:0003677|GO:0006355
Trre13g01461 101 Pfam No apical meristem (NAM) protein 39 87 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01461 Trre-Chr13 11835046 11838468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01461 32 84 NAC Transcription Factor Family AT1G79580 77.358 8.45e-25 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre13g01461 NAM 1.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01461 - - vun:114178728 103.605