Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01413 ATGGAAGCTACTTCAATTACACAATTGTTGAAAAGCTTTTGTGATGCTATGCAATGGCAGTATGCTGTGTTTTGGAAGCTTAATCACCTGTCTCCGATGACTTTGAATTGGGAAAATGGTTACCAAAAAAGTAATCAGTCTTTGGGGAGTATGTGGGGGGATATCAGTTTTGAATCCCCAGATGATGTATATTCTTCAAGGAGTGAAGGAACTGATGATTCAGGAGATTATTCAGTTCGACTTCTCATGATCGAAATGTCTCACCGTAAATACAGCTTGGGAGAAGGGGTTGTTGGCAAATTAGCTCTTGTCAAGGAACATTTTTGGGCTTCCTGCGAGGATATTTTCACTGGTAAATTTGACACTAATTTAATTCCTGAGTGTCCTGATGAGTGGCTTCTCCAATTTGCATCAGGCATCAAGACTATTGTGCTAGTACCAGTTCTTCCACAAGGGCTGTTGCAATTTGGTTCATTTAAAACGGTTGCCGAAGACCTAGAGTTTGTTACCAATATCAAGGAGCAATTCAATTTCATTCAATGTCTGGAAGCTAATCCTACACCTTTGAACTTGGGAACTGATTCTCAAGATTGGTCATTCCCAGCTCTATCGCATTACTTGATGGATAGCTTCGACGAATCTTCCTCAGCTAGTACTTCTCTCAATATGAATAAGTCAGTAAGATTTCCTTGGGATGATGATTATTGGTTGTCTAGTGAAATTCAGCCGAAATCTCTAAAAAGATCACATGAAAATGAGATGGTTTCCTCATCATTTGAAACGTCAATTGATCCAAAACATATTGGTTATGTGGAGACAAAATCAAATCATTTGGTAGAAGAGATATGGCCCTGGTCTCACTTTGTCGACAATGAAGGAAAGTTCGGTGAGATATCGAATGGTTTCAGTTCTTACTCTGATAATAATATGACTGAGAAAGAATTTGGAGGCACTGAAACTGGTCATGTTGATGTTAAGAATTTCAATTTCAATAACTTCTCCACTGTTCCTTCAATGATTGAATTGGACAAAGCAATTGGATCTGTTGCATATAGGCAGAAAGGAAAATCTATACCAAAATATATCGCAGATGAGGATACTTTCAGCAGTTCAATTTTAATATCCAATAAAAAGCAACATGATGATATTAAAAGTTTGGAGTTTCCTGAAGAAACAGATCCAGAATATCTATTAGATGCAGTTGTTGGCAATTTATACAGCGCTTCTGATGATACTTCATGTAGATCGAACAGTGTTAGATCTCTCATAACAATGCCGTCAGAGTTTACTGTCCCCATTCAGCCAAAAATCTATTCTGCAGAAAGCAGCATGTTTCTGAAAAGTTCCGATGTTGGAAGTGATCTCACGCCTCCAGTTACAGCTAAGGGTAAAGACGTATTCACGAACCATTATATATCAACTTTTGATGGAAACTCAAGCTTATTGGTCGATGAGGAACCACAAGAAAAGGTCGATAGTCATATGGAGCCTATTACTCGACCAAAGCTCTCCAGCGGGAGCAAGAAAAGAGCAAAAGTAGGTAATAACAAAAATTCAAGGCCCAGAGATAGACAGCTGATCATGGACAGGATGAAGGAGTTGAGGGAACTCATCCCAGATGGTGGAAGGTGTAGCATTGACAACCTCTTGGAGCGAACCATAAAGCATATGATGTACTTAAGAATGGTAACAAGCCAGGCTGAGAAACTGAAACGATTTGCTGATCGTGAGGTACCTGAAAGGAAAAGGCAGAAAATAATTGGCAGCCATCCTGGAAGAAGCTGTGCATTTGACTTTGAAAGTGAACAATCATGGCCCATAGTCATAGAAGATTTGGAATCCTCAGGTCACATGCTCATAGAGATGGTATGCGATGAGCATGGACTGTTCTTGGAGATTGCTCAGGCGATCCGAAGACTGGACATTACCATCTTGAAAGGGACTTTAGAAAACCGTTCAAGTACCAGCTGGGCTTGTTTCATTGTTGAGGTTCCAAGAGGTTTTCACAGGATGGATATTTTATGTCCTTTACTGCATCTTTTGCAGCTTAGGAGAAATCCTGTCTCATGA 2070 0.3976 MEATSITQLLKSFCDAMQWQYAVFWKLNHLSPMTLNWENGYQKSNQSLGSMWGDISFESPDDVYSSRSEGTDDSGDYSVRLLMIEMSHRKYSLGEGVVGKLALVKEHFWASCEDIFTGKFDTNLIPECPDEWLLQFASGIKTIVLVPVLPQGLLQFGSFKTVAEDLEFVTNIKEQFNFIQCLEANPTPLNLGTDSQDWSFPALSHYLMDSFDESSSASTSLNMNKSVRFPWDDDYWLSSEIQPKSLKRSHENEMVSSSFETSIDPKHIGYVETKSNHLVEEIWPWSHFVDNEGKFGEISNGFSSYSDNNMTEKEFGGTETGHVDVKNFNFNNFSTVPSMIELDKAIGSVAYRQKGKSIPKYIADEDTFSSSILISNKKQHDDIKSLEFPEETDPEYLLDAVVGNLYSASDDTSCRSNSVRSLITMPSEFTVPIQPKIYSAESSMFLKSSDVGSDLTPPVTAKGKDVFTNHYISTFDGNSSLLVDEEPQEKVDSHMEPITRPKLSSGSKKRAKVGNNKNSRPRDRQLIMDRMKELRELIPDGGRCSIDNLLERTIKHMMYLRMVTSQAEKLKRFADREVPERKRQKIIGSHPGRSCAFDFESEQSWPIVIEDLESSGHMLIEMVCDEHGLFLEIAQAIRRLDITILKGTLENRSSTSWACFIVEVPRGFHRMDILCPLLHLLQLRRNPVS 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01413 689 MobiDBLite consensus disorder prediction 483 497 - -
Trre13g01413 689 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 511 560 IPR011598 GO:0046983
Trre13g01413 689 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 176 IPR025610 -
Trre13g01413 689 MobiDBLite consensus disorder prediction 483 522 - -
Trre13g01413 689 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 301 686 IPR043561 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01413 Trre-Chr13 11450737 11454934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01413 341 686 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 36.290 7.55e-46 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01413 - - gmx:100820605 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01413 13 11450737 11454934 Trre13g01413 13 11450737 11454934 ECH