Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01407 ATGTCTTATAGTTATTTCCCCATTAGTTACCAAAGAAAGATGGAGTACAACCCTAATAAATCTGACCAAAGATGGAGCTCAGATGATCTAGGTGGTCCTGGACAAGTCAGGTCTTATTCTTGTACTTTTTGCAAGAGAGGATTCTCAAATGCACAAGCATTAGGAGGCCACATGAATATCCATAGAAGAGATAGAGCAAAGCTCAAACAATCTTCCGAAGAAAATTCGCTTTCTTTAGACATCTCAACCAAGAACACAAATGATCCTGACCATATTGATTTGGAACAGAATCATGAAATTCAACGGGGAAAGTTTACAAAAGAATTTCCTCGTAGTTCTTCATTTGTTGATATAAAGGGAGGTGGTGCTATGGCTCAAAGGATTGAAGAGAAGAAATGTGATATAGATCTTGAGCTTAGGTTAGGTTATGAGCCAATAGATTCATCAACATTGAGCACTCGATCGTTCTTTTGA 474 0.3776 MSYSYFPISYQRKMEYNPNKSDQRWSSDDLGGPGQVRSYSCTFCKRGFSNAQALGGHMNIHRRDRAKLKQSSEENSLSLDISTKNTNDPDHIDLEQNHEIQRGKFTKEFPRSSSFVDIKGGGAMAQRIEEKKCDIDLELRLGYEPIDSSTLSTRSFF 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01407 157 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Trre13g01407 157 Gene3D Classic Zinc Finger 31 103 - -
Trre13g01407 157 PANTHER OS07G0101800 PROTEIN 19 91 - -
Trre13g01407 157 MobiDBLite consensus disorder prediction 63 93 - -
Trre13g01407 157 SUPERFAMILY beta-beta-alpha zinc fingers 37 65 IPR036236 -
Trre13g01407 157 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01407 Trre-Chr13 11383206 11383679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01407 35 150 C2H2 Transcription Factor Family AT3G53820 38.849 1.21e-18 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g01407 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01407 - - mtr:25498560 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01407 13 11383206 11383679 Trre13g01407 13 11383206 11383679 ECH