Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01403 ATGGAGAAAAGTAGCAGCATCTATGGGTTGCGTACGAAAGTTTTATCCCAGGTTGACCAGCTCATGTATGCAGGATTCAAGGATGTTGATCCTAACAATTTAACATTGAATGGAATTGCTGAGATAGAGAAAAATGGAATAATAAGATTAACAAATGAGACAAGCAAATTAATGGGTCATGCTTTTTACTCTCAACCTTTTCAGCTAAAGAACTCATCAACCGGTACAGTTTTTTCCTTTTCGTCATCTTTTGCTATTGCTGTTGTTCCTGAATATCCTAAACTTGGTGGTCATGGCATGGCTTTCACAATAGCACCTACAAAAGATCTCAAAGCTTTACCTATTCAGTATCTTGGTCTTCTCAATTCAAGTAATGTTGGTAATTTCTCAAACCATCTTTTCGCTGTTGAGTTTGACACCGTTCAAGACTTTGAGTTTGGTGATATTAATGATAATCATGTTGGAATAGACATCAATAGTTTGCAGTCAAATGCATCTGTTATTGCTGGCTATTACACTGATGATTCAACCAAACAAGATCTTAATATCAAAAGTGGAAAACCAATTCTAGTTTGGGTTGATTATGATTCTTCAATGAATCTTATTAGTGTTACACTTTCTCCTACTACAACCAAACCTAAAAAACCAATTTTGTCCTTTTCTATGGATCTATCACCTATTTTTCATGATACTATGTATGTTGGATTCTCTGCTTCAACTGGTTTACTTGCTAGCTCTCATTACTTATTGGGTTGGAGCTTTAAAATTAATGGACCAGCACCACCACTTGATTTGTCGTCGCTACCACAACTTCCACAGCCAACAAAGAAACAAACTTCTCTGATAACTGGTGTTTCAGTTATAGCTTTGGTTATTGCATTGTGTTCTATAGCATTTGGTATTTACATTTTCAGAAAAATTAAGAATGCTGATGTAATAGAAGCATGGGAGCTTGAAATTGGACCGCATAGATACTCCTATCAAGAACTCAAGAAAGCTACAAAAGGTTTTAAGGAGAAAGAGTTACTTGGGCAGGGTGGTTTCGGAAGAGTTTACAAAGGAACAATACCTAAATCAAATATACAAGTAGCTGTTAAGAGAGTTTCACATGAATCAAAACAAGGTTTGAGGGAATTTGTAGCCGAAATTTCCAGCATAGGCCAGCTCCGCCACCGGAATTTGGTTCAGTTACTCGGCTGGTGTCGCCGCAGAGGCGACCTTTTACTCGTGTATGACTTCATGGCTAATGGAAGCTTAGACAAGTACTTGTTTGAGGATTCAGAAATTGTGCTAAGTTGGGAACAAAGGTTTAAGATAATAAAAGATGTTGCTTCAGGGCTTTCGTTTTTGCATGAAGGTTATGAGCAAGTGGTAATACACAGAGATGTTAAGGCTAGTAATGTGCTGTTAGATTTTGAACTCAATGGAAGATTAGGTGATTTTGGTTTGGCAAGGTTGTACGAACATGGTGCTAATCCCGGCACCACAAGAGTGGTGGGAACCTTAGGGTATTTGGCGCCGGAGTTGCCTAGAACAGGAAAGTCATCTACATGCTCCGACGTTTTTGCATTCGGTGCACTTCTGCTAGAGGTTGCTTGTGGAAGAAGGCCTATTGAACCTAAGGTATTACACGAAGAGTTGGTATTGGTGGAATGGGTGTGGGAAAAATACAAAGAAGGAAGAATGCTTGAAGTAGTTGATCCAAAATTGAATGGTAAGTTTGATGAAAATGAAGTAATGATGGTGTTGAAATTGGGGATGATATGCTCAAATGATGTGCCAACTATAAGGCCTAGCATGAGACAAGTAGTGAGGATTTTGGACCGAGAAGTTGTGTTGCCAAATGAATTGAGAAAGCCAGGAGGTATTGATTCTCATGAAGGGTTTGATGAATTTTTGCATTCTCTTGGATCTTCTTCATTTGATATGACGAATTCTAGTTCCTATCTTGGAAATAGAGACATTAATATTAGTTCAATCTCTTTTGCTAATTCAACTTTGTCACTTCCCGGTGCTAGAGTAGAATGA 2028 0.3821 MEKSSSIYGLRTKVLSQVDQLMYAGFKDVDPNNLTLNGIAEIEKNGIIRLTNETSKLMGHAFYSQPFQLKNSSTGTVFSFSSSFAIAVVPEYPKLGGHGMAFTIAPTKDLKALPIQYLGLLNSSNVGNFSNHLFAVEFDTVQDFEFGDINDNHVGIDINSLQSNASVIAGYYTDDSTKQDLNIKSGKPILVWVDYDSSMNLISVTLSPTTTKPKKPILSFSMDLSPIFHDTMYVGFSASTGLLASSHYLLGWSFKINGPAPPLDLSSLPQLPQPTKKQTSLITGVSVIALVIALCSIAFGIYIFRKIKNADVIEAWELEIGPHRYSYQELKKATKGFKEKELLGQGGFGRVYKGTIPKSNIQVAVKRVSHESKQGLREFVAEISSIGQLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFEDSEIVLSWEQRFKIIKDVASGLSFLHEGYEQVVIHRDVKASNVLLDFELNGRLGDFGLARLYEHGANPGTTRVVGTLGYLAPELPRTGKSSTCSDVFAFGALLLEVACGRRPIEPKVLHEELVLVEWVWEKYKEGRMLEVVDPKLNGKFDENEVMMVLKLGMICSNDVPTIRPSMRQVVRILDREVVLPNELRKPGGIDSHEGFDEFLHSLGSSSFDMTNSSSYLGNRDINISSISFANSTLSLPGARVE 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01403 675 FunFam L-type lectin-domain containing receptor kinase S.4 17 262 - -
Trre13g01403 675 Pfam Protein tyrosine and serine/threonine kinase 339 607 IPR001245 GO:0004672|GO:0006468
Trre13g01403 675 CDD lectin_legume_LecRK_Arcelin_ConA 23 258 IPR001220 GO:0030246
Trre13g01403 675 Pfam Legume lectin domain 20 268 IPR001220 GO:0030246
Trre13g01403 675 SUPERFAMILY Protein kinase-like (PK-like) 319 611 IPR011009 -
Trre13g01403 675 FunFam L-type lectin-domain containing receptor kinase S.4 414 619 - -
Trre13g01403 675 ProSitePatterns Protein kinases ATP-binding region signature. 343 366 IPR017441 GO:0005524
Trre13g01403 675 PANTHER - 37 614 - -
Trre13g01403 675 FunFam Lectin-domain containing receptor kinase A4.3 322 413 - -
Trre13g01403 675 Gene3D Transferase(Phosphotransferase) domain 1 414 619 - -
Trre13g01403 675 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 276 IPR013320 -
Trre13g01403 675 Gene3D - 20 258 - -
Trre13g01403 675 CDD STKc_IRAK 343 609 - -
Trre13g01403 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Trre13g01403 675 SMART serkin_6 337 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01403 675 Gene3D Phosphorylase Kinase; domain 1 322 413 - -
Trre13g01403 675 ProSiteProfiles Protein kinase domain profile. 337 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01403 Trre-Chr13 11357625 11360332 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01403 14 670 Receptor kinase-like Gene Family AT3G55550 58.471 0.0 777
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre13g01403 PK_Tyr_Ser-Thr 5.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01403 - - gmx:100784346 1016.14