Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01402 ATGACAACCCATCTTCAATTTTTGTTATCATTTTTTCTCTTCTTTTTTGTACCAATTTTATCTCAAGTTGACCAACTCTTATACAATGGATTCAAGAACATTAGTCCTAAAAATCTAACCTTGAATGGAATTGCTGAGATAGAGAAAAATGGTATAATAAGATTAACAAATGAAACAAGTAGATTATTGGGTCATGCTTTTTATCCTTTACCTTTTCAACTAAAGAACAAAACAACTGGTAAAGTTTTCTCTTTTTCTTCATCTTTTGCTATTTCTGTTGTTCCTGAATATCCTAAACTTGGTGGTCATGGCATGGCTTTCACAATAGCACCTTCAAAAGATCTTAAAGCTTTACCAAGTCAATATCTTGGTCTTCTTAATTCAAGTGATATTGGTAATTTCTCTAACCATCTTTTTGCTATTGAGTTTGATACTGTTCAAGATTTTGAGTTTGGTGATATTAATGATAATCATGTTGGTATTAACATTAATAGTATGCACTCAAATGCATCTGTTACTGCTGGTTATTATGATGATGGTTTAGTAGTACAAAATATTAGTATGAAAAGTGGTAAACCAATTTTATGTTGGGTTGATTATGATTCTTCAATTAATCTTATTAGTGTTACACTTTCACTAACTTCAAATAAGCCTAAAAAACCCATCTTGACTTTTCATATGGATTTGTCACCTATTCTACTTGATACTATGTATGTTGGTTTTTCTGCTTCAACTGGTTTACTTGCTAGCTCTCATTATGTTTTGGGTTGGAGTTTTAAAATCAATGGGCCGGCACCGTTTCTTGATTTGTCGAAACTTCCACAACTTCCACAACCGAAGAAGAAACATACTTCTTTGATAATCGGTGTTTCGGTTGTGGCTTCAGTTATTGCATTGTGTTCTGTTGCATTTGGTGTTTACCTTTTTAGAAAGATTAAGAATGCTGATGTGATAGAGGCTTGGGAGCTTGAAGTTGGGCCTCATAGATACTCTTATCAAGAGCTTAAGAAAGCTACAAAAGGTTTCAAGGAGAAACAGTTACTCGGGCAGGGTGGTTTTGGGAAAGTTTTTAAAGGGATATTGCCGAGATCGAAGATTGAAGTAGCTGTTAAGAGAGTTTCACATGAATCAAAACAAGGGTTGAGGGAATTCGTGTCTGAAATCGCTAGCATAGGTCGGCTTCGCCACCGGAATTTGGTTATGTTACTCGGGTGGTGTCGCCGTAGAGGCGATCTTTTACTTGTGTTGTACGAGCATGGCGCTAATCCCGGCACCACAAGAGTGGTTGGAACATTAGGCTATTTGGCACCGGAGTTACCTAGAACCGGAAGAGCAACAACAAGCTCCGACGTATTTGCATTCGGCGCGCTTCTTCTTGAGGTTGTTTGCGGAAGAAGGCCTATTGAACCTAAAGCACTACAAGAAGAGTTGGTGTTAGTAGATTGGGTTTGGGAAAGGTTCAAAGATGGAAGAATGTTTGAAGTAGTTGATCCTAAATTGAATGGTGATTTTGTTGAAAGTGAGGTAATGATGGTGTTGAAATTAGGGTTGATATGTTCAAATGATGTTCCTACAATAAGGCCTAGCATGAGACAAGTAGTAAGGATTTTGGATGGAGAAGTTGAGTTGCCAAATGAATTGAGAAAACCAGGAGGTATTGATTCACAAGAAGGGTTTGATGAATTCTTGCATTCTCTTGCATCTTCTTCATTTGATAAGATGAGTTCAAGTTCTTATATTGGAAATAGAGACATTGATAATAGTTTTATCACTTTTGGTAATTCACCTCAATCAATTCTCAATGCTAGAGGAGAAACTAGATTTGGACATTGGACACTATCTGTACACAAATCTTAG 1857 0.3646 MTTHLQFLLSFFLFFFVPILSQVDQLLYNGFKNISPKNLTLNGIAEIEKNGIIRLTNETSRLLGHAFYPLPFQLKNKTTGKVFSFSSSFAISVVPEYPKLGGHGMAFTIAPSKDLKALPSQYLGLLNSSDIGNFSNHLFAIEFDTVQDFEFGDINDNHVGININSMHSNASVTAGYYDDGLVVQNISMKSGKPILCWVDYDSSINLISVTLSLTSNKPKKPILTFHMDLSPILLDTMYVGFSASTGLLASSHYVLGWSFKINGPAPFLDLSKLPQLPQPKKKHTSLIIGVSVVASVIALCSVAFGVYLFRKIKNADVIEAWELEVGPHRYSYQELKKATKGFKEKQLLGQGGFGKVFKGILPRSKIEVAVKRVSHESKQGLREFVSEIASIGRLRHRNLVMLLGWCRRRGDLLLVLYEHGANPGTTRVVGTLGYLAPELPRTGRATTSSDVFAFGALLLEVVCGRRPIEPKALQEELVLVDWVWERFKDGRMFEVVDPKLNGDFVESEVMMVLKLGLICSNDVPTIRPSMRQVVRILDGEVELPNELRKPGGIDSQEGFDEFLHSLASSSFDKMSSSSYIGNRDIDNSFITFGNSPQSILNARGETRFGHWTLSVHKS 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01402 618 Gene3D - 25 263 - -
Trre13g01402 618 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 282 IPR013320 -
Trre13g01402 618 Gene3D Phosphorylase Kinase; domain 1 327 414 - -
Trre13g01402 618 Pfam Protein tyrosine and serine/threonine kinase 432 536 IPR001245 GO:0004672|GO:0006468
Trre13g01402 618 Pfam Protein tyrosine and serine/threonine kinase 344 416 IPR001245 GO:0004672|GO:0006468
Trre13g01402 618 ProSitePatterns Protein kinases ATP-binding region signature. 348 371 IPR017441 GO:0005524
Trre13g01402 618 Gene3D Transferase(Phosphotransferase) domain 1 415 546 - -
Trre13g01402 618 FunFam L-type lectin-domain containing receptor kinase S.4 22 266 - -
Trre13g01402 618 CDD lectin_legume_LecRK_Arcelin_ConA 25 263 IPR001220 GO:0030246
Trre13g01402 618 ProSiteProfiles Protein kinase domain profile. 342 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01402 618 FunFam Lectin-domain containing receptor kinase A4.3 327 419 - -
Trre13g01402 618 Pfam Legume lectin domain 25 273 IPR001220 GO:0030246
Trre13g01402 618 PANTHER - 31 415 - -
Trre13g01402 618 SUPERFAMILY Protein kinase-like (PK-like) 324 545 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01402 Trre-Chr13 11340877 11343183 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01402 408 557 Receptor kinase-like Gene Family AT3G55550 58.940 1.52e-52 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre13g01402 Lectin_legB 1.6e-74 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01402 - - gmx:100784346 613.224