Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01401 ATGTCTTCAAAACTTGTAACAATATTTTTCATGTTTGTGTCATTAGTAGCAAGTGAAGAAGATATCAATATTAGTTTCATCTATAATGGATTCAAATCTTCACATGATTTGTATCTTGATGGTGTTGCTGATTTAACCTCAAATGGTTTACTTAGATTAACCAATGATACAAAACAACAAAAGGGTCATGCTTTTTATCCAAATCCTATAGTTTTCAACAATGGAAGTAGTAGTAATGGTATTTCTTCTTTTTCAACTACTTTTGTTTTTGCTATAAGATCAGAATTTCCTAATCTTAGTGGTCATGGAATTGTTTTTGTTGTTTCTCCTACAAAAGGGTTACCAAATTCACTACCAAGTCAGTATCTTGGTGTATTCAATGAATCAAACATTGGAAAAACCGAAAACCGCGTTTTCGGGTTAGAACTTGATACAATTATGAATACTGAGTTTGATGATATCAATGATAACCATGTTGGAATTGATATCAATGGATTGAAATCAGAAAAATCAGCTTCTGCAGGATATTATGATATCAATGGTAATGAGTTCAAGAATTTGAGCCTTTTTAGTGGCTTACCAATGCAAGTTTGGTTGGAATATGATAGTGAAAAGAAAAAGATTGATGTTACTTTAGCTCCAATTAATGTTGTTAAACCAAAACAACCTTTGTTAACATTATCCAAAGATCTTTCATCAATTTTGCAAAATACTATGTATGTTGGATTTTCATCTTCAACAGGTTCAATTCAAACTTCTCATTATGTTCTTGGTTGGAGTTTTAAGGTTAATGGTCAAGCTCAAAACCTTAAAATCTCAGAACTTCCAAAGCTACCAACTTTAGATGAAAAAAAGGATTCTAAGGTAATTTTGATTATTGGGTTGCCTTTGATTTCACTATGTTTGATTCTAATGGTAGCTATAGCAATGTTTCATTTCATCAAAAAGAAGAAAAAGTTTTCTGAACTTCATGAAGATTGGGAGAAAGACTATGGAACACAAAGATTCAAGTACAAAGATTTATACTTTGCAACAAATGGTTTCAAGGAGAAGGAACTATTAGGAACAGGTGGATTTGGTAGAGTCTACAAAGGTGTAATGCCAAATTCAAAACTTGAAGTAGCTGTTAAGAGAGTTTCACATGAATCAAGACAAGGAATGAAGGAATTCGTCGCGGAAATTGTTAGTATCGGTCGTCTTCGTCATAGAAATCTTGTTCCGCTTCTCGGCTATTGTAGGCGAAAAGGGGAGTTACTTTTGGTTTATGATTACATGGCTAATGGAAGTTTAGACAAATATTTACACAACAAAGGACAAAGATTATTTACCTTAAATTGGAGTCAAAGGTTTAGAATCATTAAAGGTGTTGCTTCTGGTTTGTTTTATTTACATGAAGAATGGGAACAAGTTGTGGTACATAGAGATATTAAAGCTAGTAATGTTTTATTAGATTCTGAATTAAATGGTAGATTAGGTGATTTTGGTCTTTCAAGATTATATGATCGTGGTACTGATCCTCAAACAACACATGTTGTTGGAACACTTGGTTATTTAGCACCAGAACATACAAGAACAGGTAAAGCTACAACAAGTTCTGATGTTTATTCTTTTGGTGCTTTTTTACTTGAAGTTGTTTGTGGTAAAAGACCTATTGAACAAAAAAGAGAATATGAGAGTGAGAGTGTAATTTTAGTTGATTTTGTTTATGATTGTTGGAAAAGAGGTGATATTGTTGAGGCTAAAGATGTAAATTTAAGTGATTATGTTGTTGAAGAAGTTGAATTGGTTTTGAAACTTGGTTTGTTATGTTCACATTGTGAGGCTTTGGCTAGACCAAGTATGAGACAAGTGTTAAGGTATTTAGAAAGGGATTTGTCACTTCCTGATTTGAGTTTTCTTAGTTTGAGTTCAATGGGATTAACTTCTGGACAGTGTGAGAATTTTCAAGATTTTGGTATGTCTTATGCTTCTTCTTCTATGGATAGACCATTTTCACATACTTCTTCAATTGCAGAATCACTTCTCTCCGGTGGTAGATGA 2040 0.3265 MSSKLVTIFFMFVSLVASEEDINISFIYNGFKSSHDLYLDGVADLTSNGLLRLTNDTKQQKGHAFYPNPIVFNNGSSSNGISSFSTTFVFAIRSEFPNLSGHGIVFVVSPTKGLPNSLPSQYLGVFNESNIGKTENRVFGLELDTIMNTEFDDINDNHVGIDINGLKSEKSASAGYYDINGNEFKNLSLFSGLPMQVWLEYDSEKKKIDVTLAPINVVKPKQPLLTLSKDLSSILQNTMYVGFSSSTGSIQTSHYVLGWSFKVNGQAQNLKISELPKLPTLDEKKDSKVILIIGLPLISLCLILMVAIAMFHFIKKKKKFSELHEDWEKDYGTQRFKYKDLYFATNGFKEKELLGTGGFGRVYKGVMPNSKLEVAVKRVSHESRQGMKEFVAEIVSIGRLRHRNLVPLLGYCRRKGELLLVYDYMANGSLDKYLHNKGQRLFTLNWSQRFRIIKGVASGLFYLHEEWEQVVVHRDIKASNVLLDSELNGRLGDFGLSRLYDRGTDPQTTHVVGTLGYLAPEHTRTGKATTSSDVYSFGAFLLEVVCGKRPIEQKREYESESVILVDFVYDCWKRGDIVEAKDVNLSDYVVEEVELVLKLGLLCSHCEALARPSMRQVLRYLERDLSLPDLSFLSLSSMGLTSGQCENFQDFGMSYASSSMDRPFSHTSSIAESLLSGGR 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01401 679 Pfam Legume lectin domain 24 276 IPR001220 GO:0030246
Trre13g01401 679 Pfam Protein kinase domain 348 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01401 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Trre13g01401 679 ProSitePatterns Protein kinases ATP-binding region signature. 354 377 IPR017441 GO:0005524
Trre13g01401 679 SUPERFAMILY Protein kinase-like (PK-like) 323 622 IPR011009 -
Trre13g01401 679 Gene3D Transferase(Phosphotransferase) domain 1 425 627 - -
Trre13g01401 679 CDD lectin_legume_LecRK_Arcelin_ConA 24 265 IPR001220 GO:0030246
Trre13g01401 679 FunFam L-type lectin-domain containing receptor kinase V.9 23 268 - -
Trre13g01401 679 Gene3D Phosphorylase Kinase; domain 1 333 424 - -
Trre13g01401 679 ProSiteProfiles Protein kinase domain profile. 348 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01401 679 PANTHER - 31 625 - -
Trre13g01401 679 FunFam Lectin-domain containing receptor kinase A4.3 333 424 - -
Trre13g01401 679 SMART serkin_6 348 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01401 679 CDD STKc_IRAK 354 623 - -
Trre13g01401 679 FunFam L-type lectin-domain containing receptor kinase S.4 425 633 - -
Trre13g01401 679 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 281 IPR013320 -
Trre13g01401 679 Gene3D - 22 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01401 Trre-Chr13 11332099 11334138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01401 17 679 Receptor kinase-like Gene Family AT2G37710 62.406 0.0 814
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre13g01401 Pkinase 8.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01401 - - mtr:25498550 1202.58