Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01393 ATGTTCCTCAATCTTGTGTTAGTGTTGTTTTTTCTTGTTACATTGGTAGCAAGTAAAGATTCTAGTTTCATCTATAATAATGGATTCCAATCATCTCATTTGTATCTTGATGGTATTGCTAATTTAACTTCCAATGGCATACTAAGACTCACCAATGACACCAAACAAGAAAAAGCACATGCATTTTATCCAAATCCTATAGTTTTCAAAAACACTTCCAATGGAAATGTGTTTTCTTTCTCAACTACTTTTGTTTTTGCTATAAGACCTCAATATCCAACTCTTAGTGGCCATGGAATTGTTTTTGTTGTTTCTCCTACAAAAGGGCTACCATATTCAATACCAAGTCAATACCTTGGTCTCTTTAACAAATCCAACAATGGAAATAGTAGCAACCATGTTTTTGGTGTTGAACTTGATACTATTGTTAATAATGAGTTTAGTGATATCAATGATAACCATGTTGGTATTGATATCAATGATTTGAATTCAACTAGTTCAATTCCTGCAGGATATTATGATGATGATAATAATGGTCAATTCAAGAATTTGACCCTATTCAGTGGCTATCCTATGCAGGTATGGATTGAATATGATAGTGAAAAGACAAAGATTGATGTTACTTTAGCTCCAATTAATGTTGTAAAACCAAAAAAATCTTTGTTATCATTGACCAAAGATCTTTCTCCAATTTTGAACAATAGTATGTATGTTGGATTTTCATCAGCTACTGGTTCAGTTTTCACTTCTCATTATGTTCTTGGTTGGAGTTTTAAGGTTAATGGTCAATCTCAAGAGCTTGTAATCTCTCAACTTCCAAAGCTACCAAGATTTGGGGTTATGTATTATATCAAAAGAAAGAATAAGTTTGCTGAGATTCTTGAAGATTGGGAACATGAATATGGACCACATAGATTTAAGTTCAAAGATTTATACTTTGCTACAAAGGGTTTCAAGGAAAAGGAGCTATTAGGAGTTGGTGGATTTGGTAGAGTCTACAAAGGTGTGATACCAGGTTCAAAACTTGAGGTGGCTGTGAAGAGGGTGTCTCATGAATCAAGACAAGGTATGAGGGAATTCGTTTCGGAGATTGTTAGTATCGGTCGTCTTCGTCATAGGAATCTTGTTCCACTTCTCGGCTATTGTAGGCGACAAGGCGAGTTACTTTTGGTTTATGATTACATGTCTAAAGGAAGTTTAGATAATTATCTATACAACCAACCAAAAGTGACCTTGAATTGGTATCAAAGATTTAAAATCGTCAAAGGTGTTGCTTCGGGTTTGTTTTATCTTCATGAAGAGTGGGAACAAGTTGTGATTCATCGAGACATAAAAGCTAGTAATGTTTTATTAGATGCTGAATTGAATGGTAGATTAGGAGATTTTGGTCTTGCAAGGTTATATGATCATGGTGCTGATCCTCACACAACTCATTTGGTTGGAACTGTAGGGTATCTAGCTCCTGAACATACAAGAACAGGTAAAGCCACTAAATTTTCCGACGTGTTTGCTTTCGGTGCTTTTCTTCTCGAGGTCGTTTGTGGTAAGAGACCTATAGAGCATGTTGGCGAAAATGAGACTGTAATTCTAGTTGATTCTGTGTTTGAACGTTGGAAAAGTGGTGAGATTCTTGAGGCAATGGATGAAAACTTAGGATCAGATTATGTGTCTGAAGAAGTTGAATTGGTGTTGAAACTTGGTTTGTTATGTTCACATTCAGAACCTATGGCTAGACCAAGTATGAGACAAGTTGTGCAGTATTTGGAGAGGGATATACCTTTACCAGATTTGTCTTTGCTTAGTTTAACTTCTTCTGGTTTAACTTTTGGGTACCATCAAGAATTTTTTGAGGACTTTCCAATGTCATATCCATCTTCTATGGACAAGACAATGTCACATACTTCGGTATCTATTGCTGATTCACTTCTTTCTGGTGGTCGTTGA 1944 0.356 MFLNLVLVLFFLVTLVASKDSSFIYNNGFQSSHLYLDGIANLTSNGILRLTNDTKQEKAHAFYPNPIVFKNTSNGNVFSFSTTFVFAIRPQYPTLSGHGIVFVVSPTKGLPYSIPSQYLGLFNKSNNGNSSNHVFGVELDTIVNNEFSDINDNHVGIDINDLNSTSSIPAGYYDDDNNGQFKNLTLFSGYPMQVWIEYDSEKTKIDVTLAPINVVKPKKSLLSLTKDLSPILNNSMYVGFSSATGSVFTSHYVLGWSFKVNGQSQELVISQLPKLPRFGVMYYIKRKNKFAEILEDWEHEYGPHRFKFKDLYFATKGFKEKELLGVGGFGRVYKGVIPGSKLEVAVKRVSHESRQGMREFVSEIVSIGRLRHRNLVPLLGYCRRQGELLLVYDYMSKGSLDNYLYNQPKVTLNWYQRFKIVKGVASGLFYLHEEWEQVVIHRDIKASNVLLDAELNGRLGDFGLARLYDHGADPHTTHLVGTVGYLAPEHTRTGKATKFSDVFAFGAFLLEVVCGKRPIEHVGENETVILVDSVFERWKSGEILEAMDENLGSDYVSEEVELVLKLGLLCSHSEPMARPSMRQVVQYLERDIPLPDLSLLSLTSSGLTFGYHQEFFEDFPMSYPSSMDKTMSHTSVSIADSLLSGGR 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01393 647 PANTHER - 15 592 - -
Trre13g01393 647 SMART serkin_6 318 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01393 647 Pfam Legume lectin domain 21 272 IPR001220 GO:0030246
Trre13g01393 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Trre13g01393 647 FunFam L-type lectin-domain containing receptor kinase S.4 395 601 - -
Trre13g01393 647 FunFam Lectin-domain containing receptor kinase A4.3 303 394 - -
Trre13g01393 647 FunFam L-type lectin-domain containing receptor kinase V.9 20 265 - -
Trre13g01393 647 CDD lectin_legume_LecRK_Arcelin_ConA 22 262 IPR001220 GO:0030246
Trre13g01393 647 Pfam Protein kinase domain 318 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01393 647 Gene3D - 19 272 - -
Trre13g01393 647 Gene3D Transferase(Phosphotransferase) domain 1 395 599 - -
Trre13g01393 647 ProSitePatterns Protein kinases ATP-binding region signature. 324 347 IPR017441 GO:0005524
Trre13g01393 647 CDD STKc_IRAK 324 590 - -
Trre13g01393 647 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 279 IPR013320 -
Trre13g01393 647 SUPERFAMILY Protein kinase-like (PK-like) 293 589 IPR011009 -
Trre13g01393 647 Gene3D Phosphorylase Kinase; domain 1 303 394 - -
Trre13g01393 647 ProSiteProfiles Protein kinase domain profile. 318 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01393 Trre-Chr13 11253916 11255937 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01393 17 647 Receptor kinase-like Gene Family AT2G37710 64.188 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre13g01393 Pkinase 8.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01393 - - gmx:100783815 944.11