Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01391 ATGTTCCACAAGCTCGTGTTTCTTGAGTTGTTTTTTCTTGTTACGTTGGTTATGGTAGCAAGTAAAGACAACAGTTTCATCTATAATAGGTTCCAATCAGGAGATCTATATCTTGATGGCAATGCTGAGTTAACCTCAAATGGCTTACTAGGACTAACCAATGATAAAATAAGAGTAATAGGCCATGCTTTCTATCCAAATCCGATAGTTTTCAAAAAAACTTCTGATGGAAATGTGTCTTCTTTCTCAACTACTTTTGTATTTGCCATAAGATCTAAATATTCAACTCATAGTAGACATGGAATTGTTTTTGTTGTTTCTCCTACATTAGGGCTACCATATTCACTACCAGCTCAGTACCTTGGTCTATTCAATGTGTCCAACATTGGAAACAGTAGCAACCATGTTTTTGGTGTTGAACTTGATACTAAGAAAGATTCTGAGTTTGGTGATATCAATAATAACCATGTTGGTATTAATATCAATGATTTGAATTCAACTAGTTCAGCTCGTGCAAGATATTATGATCAATGGCAGGTCACCCGAGAAATTTCACTTTCCAGTGGAGATCCTATCCAGGTATGGATTGAATATGATGGAGTGAAGAAAAAGATTGATGTTACTTTAGCTCCAATTAATGTTGTTAAACCAACACGACCTTTGTTATCAACGACAATAGATCTTTCTCCAATTCTTAACGATATTATGTATGTTGGATTTTCATCAGCTACCGGTTTAATTGATACTTCTCATTATATTCTTGGTTGGAGTTTTAAGGTTGATGGTAAAGTTCAAAACCTTATAATCTCTAAACTTCCAACACTAACAAGATTTTCAGAGAAAAAAGAATCAAAAATGTTAACTGTTGGGTTGCCATTTAGTTTGCTAAGTTTGGTTTTCTCGATAACTTTAGGGGTTATTTATTATATCAAAAGGAAGAACAAGTTTGCTGAGATTCTTGAAGATTGGGAACATGAATATGGTCCACATAGATTTAAGTTCAAAGATCTATACTCTGCCACCAATGGTTTCAAGGAAAAGGGGCTATTGGGAGTTGGTGGATTTGGTAGAGTCTACAAAGGTGTGATACCAAGTTCCAAACTTGAGGTTGCTGTGAAAAGGGTGTCTCATGAATCAAAACAAGGGATGAGGGAGTTTGTGTCGGAAATTGTTAGTATCGGTCGTCTTCGTCATAGGAATCTTGTTCCACTTCTTGGCTATTGCAGGCGAAAAAACGAGTTACTTTTGGTTTATGAGTACATGCCTAATGGAAGTTTAGATAATTATCTATACAAAAAACCAAAAGTTAGCTTGAATTGGTGTCAAAGATTTAGAATCATCAAAGGCGTTGCTTCGGGTTTGTTTTATCTTCATGAAGAATGGGAGCAAGTTGTGATTCATAGAGACATAAAAGCTAGCAATGTGATGTTAGATGCTGAATTGAATGCTAGATTGGGAGATTTTGGACTTTCAAGATTGCATGATCATGGTGCTGATCCGTATACAACTCATGTAGCTGGAACTATAGGTTATCTTGCTCCTGAGCATACTAGAACAGGCAAAGCTACTAAATTTTCCGATGTGTATGCTTTTGGTGCATTTCTTCTTGAGGTTGTTTGTGGTAGGAGGCCTATAGAACGTGTAGGACAATATGAGAGTGTTATTCTAGTTGATTGTGTGTTTAAATGTTGGGAAAGAGGTGAGATTCTTGAGGCAAAGGATGCTAACTTAGGATCAGATTATGTGTCTGAAGAGGTTGAATTGGTGTTGAAACTTGGCTTGTTGTGTTCACATTTAGAACCTTTGGCTAGACCAAGTATGAGGCAAGTTATGCAGTATTTGGAGAAGGATATACCTATGCCTGATTTGTCATTGCTTAGTTTATCTCCTTTTGGATTAACTTTTGGGTACCAAGAATTTGTCACGGACAAGACAATGTCACATCCTTCAACGTCTATTGTTGAATCACTTCTCTCTGGAGGTCGTTGA 1989 0.3655 MFHKLVFLELFFLVTLVMVASKDNSFIYNRFQSGDLYLDGNAELTSNGLLGLTNDKIRVIGHAFYPNPIVFKKTSDGNVSSFSTTFVFAIRSKYSTHSRHGIVFVVSPTLGLPYSLPAQYLGLFNVSNIGNSSNHVFGVELDTKKDSEFGDINNNHVGININDLNSTSSARARYYDQWQVTREISLSSGDPIQVWIEYDGVKKKIDVTLAPINVVKPTRPLLSTTIDLSPILNDIMYVGFSSATGLIDTSHYILGWSFKVDGKVQNLIISKLPTLTRFSEKKESKMLTVGLPFSLLSLVFSITLGVIYYIKRKNKFAEILEDWEHEYGPHRFKFKDLYSATNGFKEKGLLGVGGFGRVYKGVIPSSKLEVAVKRVSHESKQGMREFVSEIVSIGRLRHRNLVPLLGYCRRKNELLLVYEYMPNGSLDNYLYKKPKVSLNWCQRFRIIKGVASGLFYLHEEWEQVVIHRDIKASNVMLDAELNARLGDFGLSRLHDHGADPYTTHVAGTIGYLAPEHTRTGKATKFSDVYAFGAFLLEVVCGRRPIERVGQYESVILVDCVFKCWERGEILEAKDANLGSDYVSEEVELVLKLGLLCSHLEPLARPSMRQVMQYLEKDIPMPDLSLLSLSPFGLTFGYQEFVTDKTMSHPSTSIVESLLSGGR 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01391 662 Gene3D Phosphorylase Kinase; domain 1 329 420 - -
Trre13g01391 662 CDD STKc_IRAK 350 616 - -
Trre13g01391 662 ProSitePatterns Protein kinases ATP-binding region signature. 350 373 IPR017441 GO:0005524
Trre13g01391 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Trre13g01391 662 ProSiteProfiles Protein kinase domain profile. 344 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01391 662 FunFam L-type lectin-domain containing receptor kinase S.4 421 627 - -
Trre13g01391 662 FunFam Lectin-domain containing receptor kinase A4.3 329 420 - -
Trre13g01391 662 Gene3D - 22 263 - -
Trre13g01391 662 Pfam Protein kinase domain 344 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01391 662 Pfam Legume lectin domain 24 272 IPR001220 GO:0030246
Trre13g01391 662 CDD lectin_legume_LecRK_Arcelin_ConA 25 262 IPR001220 GO:0030246
Trre13g01391 662 Gene3D Transferase(Phosphotransferase) domain 1 421 625 - -
Trre13g01391 662 PANTHER - 31 618 - -
Trre13g01391 662 SUPERFAMILY Protein kinase-like (PK-like) 319 615 IPR011009 -
Trre13g01391 662 SMART serkin_6 344 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01391 662 FunFam L-type lectin-domain containing receptor kinase V.9 23 265 - -
Trre13g01391 662 SUPERFAMILY Concanavalin A-like lectins/glucanases 12 263 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01391 Trre-Chr13 11242956 11244944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01391 17 662 Receptor kinase-like Gene Family AT3G53810 59.304 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre13g01391 Pkinase 9.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01391 - - gmx:100783815 895.96