Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01388 ATGGAAGCAAATTTTGTGATTCAACTAGGAGACAAAGAACACGTCCCCATTGTAACATTTTCAGCAACAAGCCCTTCACTATCATCACTTCAAAGTCCATATTTTTTCCAAATATCACAAATTGATTCAGCTCAAGTAAAAGCAATCACCTCAATTATCCTAGCTTTTGGTTGGAATCAAGTGGTCCCTATTTACATAGACAATAGTTTTGGTGAAGGACTCATACCCTATCTAACCAATGTTCTTCAACAAGCCAATATCCAAGTTCCATATCTAAGTGCAATTTCTCTTTCAGCCACAGATGATGCTATCACTCAAGAACTTTATAAAATAATGACTATTATATCCACTAGAGTATTTATTGTGCACATGTCACCAAATCTTGGGTCTAAACTGTTTACCTTAGCAAAAAAAATAGGGATGATGGGTCAAGGCTATGTTTGGATAGTAACAGACAGTATGACTAATTTGTTCAATTCATTGAATTTGAATGTGTGGGATTCAATGGAAGGAGTAATTGGTGTGAGGACTTATATCCCTAGAACAAAAAAGCTAGATGATTTTAGAGTGAGATGGAAAAGAAGATTCATAAGTGACAATCCAACACTTGTTGATACAAATTTGAACATTTTTGGAATATGGGCTTATGATGCTACAATTGCATTAGCAATGGCAATCGAGAAGGTTGGAAATGGAGGCACCAAATTTGGTTACAATGAGAGCAACACTTCAAGCAATTATTATATGCCTAATTTTGAAAAATTTGGCATTTCACAAAGTGGTGAGAAGTTGAGCAAAGCTTTGTCAAACACTACATTTGATGGTCTTAGTGGTAATTTCAATGTTGTTAGTGGGAAGTTACAAGCACCAATATTTGAGATAATTAATGTGATTGGTAATGGAGAAAAGAGGGTTGGATTTTGGACACCAAATAAAGGGTTGACTAGAAATTTGGACAGACACGACATGAGCAATAATAACCTATATTCAAGTTCTAAAAATGAGATTGGATCAATTCTATGGCCAGGGGATGTGTACTCTATTCCAAAGGGATGGGAAATTCCAACTATTGGGAAGAAGTTGAGGATAGGTGTTCCGGTTAAAAAAGGAAATAATTATACTGAATTTGTGAAAGTAACATATGATCATAATACCAATAAAACAGATGCTACTGGATTCTGCATTGATGTATTCAAAGCTGTGGTGGATGTTTTGCCTTATGCCTTACCATATGAATTTTTTCGATTTGCAAAACCTAATGGTGAAATGGCAGGAAACTACAATGACTTAATCGCTCAAATTTATTATGGGAAGTATGATGCAGTCGTGGGGGACGTAACAATCACTGCTAACAGGTCCAACTATGTTGATTTCACAATGCCATACACAGAAACTGGTGTATCAATGGTTGTTCCAATGATAGACAACAGGAAGAAAAATGCATGGGCTTTTTTGAAACCACTGTCATGGGGTCTTTGGGTAACATCAGCTTGCTCATTTGTATTCATTGGATTTGTTGTATGGGTACTTGAACATAGAATAAACAACAATTTCAGGGGACCACCCTCTCATCAGATTGGCACAAGCTTATGGTTTTCCTTTTCAACTATGGTCTATGCTCACAGAGAGAAAGTAGTGAGCAACTTGGGTAGATTTGTGGTGGTTGTATGGCTTTTTGTGGTTCTAATTCTAGTTCAAAGTTACACTGCAAGCTTGACTTCACTCTTAACAGTTGAACAACAAAGGCCAGCTATTACAGATGTTAACCAACTTCTAAAGAATAAGATGAATGTTGGTTATCTCAGAGGTTCTTTTGTTTACGGAATTTTGAAGAGTTTGGGTTTCCCAGACTCTCAGCTGATTACTTATCAATCACCTGAAGAATGTCATGAACTTTTCCTAAAAGGAAGTGTAAATGGTGGCATTGATGCAGCTTTTTTTGAGGTTGCTTATGTTCAACACTTTCTTAGAAGTTATAGTTGTTCAAAGTATGTCATGGTTGAACCAAGATATAAAACTGGTGGTCTTGGCTTTGCCTTTCCAAAAGGTTCACCTCTTGTAGCTAACATTTCTAGGGCAATTCTAAATGTGACTCAAGGAGGCAAAATGAGAACAATTGAGGATGCATGGTTCAAAGAACCTAGTTGTCTAGTTTCTAACTCGGAAGTTTCCTCTAATAACAATCTTGGACTTGAAAGCTTTTGGGGACTGTTTCTCATTGCAGGGATTGCTTCCCTATTAGCACTCCTAATCTTTGTGGTTACATTTCTATATCAGCACAAACATATTTTGTTAAACAATGATCCAAGTACTTCAATATGGCAACTAGTATGCATCTTGGTAAGGATATTTGATCAAAAAGACTTGGACTGTCACATATTCAAGGAAAGTGAAAATAAAATTGAAAGCAGTAATACTCATCATCATGATGATAATTTAGGTGCAATTGAGGCCTCTCCAGATACACATTGTCCTCCTAGTCCATCTAGTCAAACTGAATCAAATGTTTCGGTTTATGGCGAATTTAGTTTTAGTCCAAACACAGAAATCAATGTTGTGCAAATTACTAATCAAGAAGCTGCTCCTGTGAACAACTGTGAAATTAACTCCCAAGCAACATGA 2622 0.3638 MEANFVIQLGDKEHVPIVTFSATSPSLSSLQSPYFFQISQIDSAQVKAITSIILAFGWNQVVPIYIDNSFGEGLIPYLTNVLQQANIQVPYLSAISLSATDDAITQELYKIMTIISTRVFIVHMSPNLGSKLFTLAKKIGMMGQGYVWIVTDSMTNLFNSLNLNVWDSMEGVIGVRTYIPRTKKLDDFRVRWKRRFISDNPTLVDTNLNIFGIWAYDATIALAMAIEKVGNGGTKFGYNESNTSSNYYMPNFEKFGISQSGEKLSKALSNTTFDGLSGNFNVVSGKLQAPIFEIINVIGNGEKRVGFWTPNKGLTRNLDRHDMSNNNLYSSSKNEIGSILWPGDVYSIPKGWEIPTIGKKLRIGVPVKKGNNYTEFVKVTYDHNTNKTDATGFCIDVFKAVVDVLPYALPYEFFRFAKPNGEMAGNYNDLIAQIYYGKYDAVVGDVTITANRSNYVDFTMPYTETGVSMVVPMIDNRKKNAWAFLKPLSWGLWVTSACSFVFIGFVVWVLEHRINNNFRGPPSHQIGTSLWFSFSTMVYAHREKVVSNLGRFVVVVWLFVVLILVQSYTASLTSLLTVEQQRPAITDVNQLLKNKMNVGYLRGSFVYGILKSLGFPDSQLITYQSPEECHELFLKGSVNGGIDAAFFEVAYVQHFLRSYSCSKYVMVEPRYKTGGLGFAFPKGSPLVANISRAILNVTQGGKMRTIEDAWFKEPSCLVSNSEVSSNNNLGLESFWGLFLIAGIASLLALLIFVVTFLYQHKHILLNNDPSTSIWQLVCILVRIFDQKDLDCHIFKESENKIESSNTHHHDDNLGAIEASPDTHCPPSPSSQTESNVSVYGEFSFSPNTEINVVQITNQEAAPVNNCEINSQAT 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01388 873 Pfam Receptor family ligand binding region 2 299 IPR001828 -
Trre13g01388 873 Gene3D - 256 360 - -
Trre13g01388 873 FunFam Glutamate receptor 41 197 - -
Trre13g01388 873 SUPERFAMILY Periplasmic binding protein-like II 339 714 - -
Trre13g01388 873 Gene3D - 616 718 - -
Trre13g01388 873 PIRSF IGluLR_plant 1 851 IPR017103 -
Trre13g01388 873 SUPERFAMILY Periplasmic binding protein-like I 5 343 IPR028082 -
Trre13g01388 873 Gene3D - 361 480 - -
Trre13g01388 873 Gene3D - 481 611 - -
Trre13g01388 873 SUPERFAMILY Voltage-gated potassium channels 491 582 - -
Trre13g01388 873 CDD PBP1_GABAb_receptor_plant 1 318 IPR044440 -
Trre13g01388 873 MobiDBLite consensus disorder prediction 802 816 - -
Trre13g01388 873 FunFam Glutamate receptor 481 611 - -
Trre13g01388 873 Pfam Ligand-gated ion channel 713 744 IPR001320 GO:0015276|GO:0016020
Trre13g01388 873 Pfam Bacterial extracellular solute-binding proteins, family 3 387 712 IPR001638 -
Trre13g01388 873 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 799 IPR015683 -
Trre13g01388 873 FunFam Glutamate receptor 360 481 - -
Trre13g01388 873 CDD GluR_Plant 359 711 - -
Trre13g01388 873 MobiDBLite consensus disorder prediction 802 834 - -
Trre13g01388 873 FunFam Glutamate receptor 257 359 - -
Trre13g01388 873 Gene3D - 43 207 - -
Trre13g01388 873 SMART GluR_14 362 713 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01388 Trre-Chr13 11221452 11225799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01388 1 867 Ion Channels AT2G29120 48.280 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01388 K05387 - tcc:18587654 992.645