Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01387 ATGGGACCAGCAACAACAATGGAAGCAAATTTTGTGATTCAACTAGGAGACAAAGAACACGTCCCCATTGTAACATTTTCAGCAACAAGCCCTTCACTATCATCACTTCAAAGTCCATATTTTTTCCAAATATCACAAATTGATTCAGCTCAAGTAAAAGCAATCACCTCAATTATCCTAGCTTTTGGTTGGAATCAAGTGGTCCCTATTTACATAGACAATAGTTTTGGTGAAGGACTCATACCCTATCTAACCAATGTTCTTCAACAAGCCAATATCCAAGTTCCATATCTAAGTGCAATTTCTCTTTCAGCCACAGATGATGCTATCACTCAAGAACTTTATAAAATAATGACTATTATATCCACTAGAGTATTTATTGTGCACATGTCACCAAATCTTGGGTCTAAACTGTTTACCTTAGCAAAAAAAATAGGGATGATGGGTCAAGGCTATGTTTGGATAGTAACAGACAGTATGACTAATTTGTTCAATTCATTGAATTTGAATGTGTGGGATTCAATGGAAGGAGTAATTGGTGTGAGGACTTATATCCCTAGAACAAAAAAGCTAGATGATTTTAGAGTGAGATGGAAAAGAAGATTCATAAGTGACAATCCAACACTTGTTGATACAAATTTGAACATTTTTGGAATATGGGCTTATGATGCTACAATTGCATTAGCAATGGCAATCGAGAAGGTTGGAAATGGAGGCACCAAATTTGGTTACAATGAGAGCAACACTTCAAGCAATTATTATATGCCTAATTTTGAAAAATTTGGCATTTCACAAAGTGGTGAGAAGTTGAGCAAAGCTTTGTCAAACACTACATTTGATGGTCTTAGTGGTAATTTCAATGTTGTTAGTGGGAAGTTACAAGCACCAATATTTGAGATAATTAATGTGATTGGTAATGGAGAAAAGAGGGTTGGATTTTGGACACCAAATAAAGGGTTGACTAGAAATTTGGACAGACACGACATGAGCAATAATAACCTATATTCAAGTTCTAAAAATGAGATTGGATCAATTCTATGGCCAGGGGATGTGTACTCTATTCCAAAGGGATGGGAAATTCCAACTATTGGGAAGAAGTTGAGGATAGGTGTTCCGGTTAAAAAAGGAAATAATTATACTGAATTTGTGAAAGTAACATATGATCATAATACCAATAAAACAGATGCTACTGGATTCTGCATTGATGTATTCAAAGCTGTGGTGGATGTTTTGCCTTATGCCTTACCATATGAATTTTTTCGATTTGCAAAACCTAATGGTGAAATGGCAGGAAACTACAATGACTTAATCGCTCAAATTTATTATGGGAAGTATGATGCAGTCGTGGGGGACGTAACAATCACTGCTAACAGGTCCAACTATGTTGATTTCACAATGCCATACACAGAAACTGGTGTATCAATGGTTGTTCCAATGATAGACAACAGGAAGAAAAATGCATGGGCTTTTTTGAAACCACTGTCATGGGGTCTTTGGGTAACATCAGCTTGCTCATTTGTATTCATTGGATTTGTTGTATGGGTACTTGAACATAGAATAAACAACAATTTCAGGGGACCACCCTCTCATCAGATTGGCACAAGCTTATGGTTTTCCTTTTCAACTATGGTCTATGCTCACAGAGAGAAAGTAGTGAGCAACTTGGGTAGATTTGTGGTGGTTGTATGGCTTTTTGTGGTTCTAATTCTAGTTCAAAGTTACACTGCAAGCTTGACTTCACTCTTAACAGTTGAACAACAAAGGCCAGCTATTACAGATGTTAACCAACTTCTAAAGAATAAGATGAATGTTGGTTATCTCAGAGGTTCTTTTGTTTACGGAATTTTGAAGAGTTTGGGTTTCCCAGACTCTCAGCTGATTACTTATCAATCACCTGAAGAATGTCATGAACTTTTCCTAAAAGGAAGTGTAAATGGTGGCATTGATGCAGCTTTTTTTGAGGTTGCTTATGTTCAACACTTTCTTAGAAGTTATAGTTGTTCAAAGTATGTCATGGTTGAACCAAGATATAAAACTGGTGGTCTTGGCTTTGCCTTTCCAAAAGGTTCACCTCTTGTAGCTAACATTTCTAGGGCAATTCTAAATGTGACTCAAGGAGGCAAAATGAGAACAATTGAGGATGCATGGTTCAAAGAACCTAGTTGTCTAGTTTCTAACTCGGAAGTTTCCTCTAATAACAATCTTGGACTTGAAAGCTTTTGGGGACTGTTTCTCATTGCAGGGATTGCTTCCCTATTAGCACTCCTAATCTTTGTGGTTACATTTCTATATCAGCACAAACATATTTTGTTAAACAATGATCCAAGTACTTCAATATGGCAACTAGTATGCATCTTGGTAAGGATATTTGATCAAAAAGACTTGGACTGTCACATATTCAAGGAAAGTGAAAATAAAATTGAAAGCAGTAATACTCATCATCATGATGATAATTTAGGTGCAATTGAGGCCTCTCCAGATACACATTGTCCTCCTAGTCCATCTAGTCAAACTGAATCAAATGTTTCGGTTTATGGCGAATTTAGTTTTAGTCCAAACACAGAAATCAATGTTGTGCAAATTACTAATCAAGAAGCTGCTCCTGTGAACAACTGTGAAATTAACTCCCAAGCAACATGA 2640 0.3648 MGPATTMEANFVIQLGDKEHVPIVTFSATSPSLSSLQSPYFFQISQIDSAQVKAITSIILAFGWNQVVPIYIDNSFGEGLIPYLTNVLQQANIQVPYLSAISLSATDDAITQELYKIMTIISTRVFIVHMSPNLGSKLFTLAKKIGMMGQGYVWIVTDSMTNLFNSLNLNVWDSMEGVIGVRTYIPRTKKLDDFRVRWKRRFISDNPTLVDTNLNIFGIWAYDATIALAMAIEKVGNGGTKFGYNESNTSSNYYMPNFEKFGISQSGEKLSKALSNTTFDGLSGNFNVVSGKLQAPIFEIINVIGNGEKRVGFWTPNKGLTRNLDRHDMSNNNLYSSSKNEIGSILWPGDVYSIPKGWEIPTIGKKLRIGVPVKKGNNYTEFVKVTYDHNTNKTDATGFCIDVFKAVVDVLPYALPYEFFRFAKPNGEMAGNYNDLIAQIYYGKYDAVVGDVTITANRSNYVDFTMPYTETGVSMVVPMIDNRKKNAWAFLKPLSWGLWVTSACSFVFIGFVVWVLEHRINNNFRGPPSHQIGTSLWFSFSTMVYAHREKVVSNLGRFVVVVWLFVVLILVQSYTASLTSLLTVEQQRPAITDVNQLLKNKMNVGYLRGSFVYGILKSLGFPDSQLITYQSPEECHELFLKGSVNGGIDAAFFEVAYVQHFLRSYSCSKYVMVEPRYKTGGLGFAFPKGSPLVANISRAILNVTQGGKMRTIEDAWFKEPSCLVSNSEVSSNNNLGLESFWGLFLIAGIASLLALLIFVVTFLYQHKHILLNNDPSTSIWQLVCILVRIFDQKDLDCHIFKESENKIESSNTHHHDDNLGAIEASPDTHCPPSPSSQTESNVSVYGEFSFSPNTEINVVQITNQEAAPVNNCEINSQAT 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01387 879 Gene3D - 622 724 - -
Trre13g01387 879 FunFam Glutamate receptor 487 617 - -
Trre13g01387 879 Pfam Bacterial extracellular solute-binding proteins, family 3 393 718 IPR001638 -
Trre13g01387 879 CDD PBP1_GABAb_receptor_plant 2 324 IPR044440 -
Trre13g01387 879 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 14 805 IPR015683 -
Trre13g01387 879 Pfam Ligand-gated ion channel 719 750 IPR001320 GO:0015276|GO:0016020
Trre13g01387 879 CDD GluR_Plant 365 717 - -
Trre13g01387 879 Gene3D - 49 213 - -
Trre13g01387 879 MobiDBLite consensus disorder prediction 808 840 - -
Trre13g01387 879 FunFam Glutamate receptor 366 487 - -
Trre13g01387 879 SUPERFAMILY Voltage-gated potassium channels 497 588 - -
Trre13g01387 879 Gene3D - 262 366 - -
Trre13g01387 879 FunFam Glutamate receptor 263 365 - -
Trre13g01387 879 Gene3D - 367 486 - -
Trre13g01387 879 SUPERFAMILY Periplasmic binding protein-like I 1 359 IPR028082 -
Trre13g01387 879 SMART GluR_14 368 719 IPR001320 GO:0015276|GO:0016020
Trre13g01387 879 PIRSF IGluLR_plant 1 857 IPR017103 -
Trre13g01387 879 Gene3D - 487 617 - -
Trre13g01387 879 FunFam Glutamate receptor 47 203 - -
Trre13g01387 879 Pfam Receptor family ligand binding region 2 305 IPR001828 -
Trre13g01387 879 SUPERFAMILY Periplasmic binding protein-like II 345 720 - -
Trre13g01387 879 MobiDBLite consensus disorder prediction 808 822 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01387 Trre-Chr13 11221434 11225799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01387 1 873 Ion Channels AT2G29120 48.292 0.0 804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01387 K05387 - tcc:18587654 999.964