Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01385 ATGTTTGGTGGAATGGCACAAATTAGAAACGAGAGTAATGTTGTAGTCAAAGTTGGAGCTGTACTTGATGTTAGCAATGGAACAGTTGGGATAATAGGATTGAGTTGCATCAACATGGCTCTCTCAGATTTCTATGATTCTCATTCTCATTACAAAACTAGAATTCAAATCATCCTTAGGGATTCTCATAAGGACGTTGTCAATGCCGCTGCACAAGCTTTGGATCTCATAAAAAATGAGGAAGTCCAAGCAATCATGGGACCAATAACCACAATGGAAGCAAATTTTGTGATTAAACTAGGAGATAAAGCACACATACCCATTGTAACATTTTCAGCAACAAGCCCTTCACTAGCATCACTTCAAAGTCCATACTTTTTCCAAATATCACAAATCGATTCAGCTCAAGTTAAAGCAATCACCTCAATTATTCAAGCTTTTGGTTGGAAACAAGTTGTCCCCATTTACATAGACAATAGTTTTGGTGAAGGACTCATACCTTATTTAACCAATGTTCTTCAACAAGCCAATATCCAAATTCCTTATCTAAGTGCAATTTCTCTTTCAGCCACAGATGATGCTATCACTCAAGAACTTTATAAAATAATGACTACTATACCCACTAGAGTATTTATTGTGCACATGACACCAAATCTTGGCTCTAAGCTTTTTGCCATGGCAAAAAAAATTGGGATGATGGGTCAAGGCTATGTTTGGATAGTAACCGATAGTATAGCTAATTTATTCAATTCATTGAATTTTAATGTGTGGGAATCAATGGAAGGAGTAATTGGTGTGAGGACTTATATTCCTAGAACAAAAAAGCTAGATGATTTTAGAGTTAGATGGAAAAGAAAATTCATAAGTAACAATCCAACACTAGTTGACATGAATTTGAGCATTTTTGGAGTATGGGCTTATGATGCCACAATTGCATTAGCAATGGCTATTGAGGAGGTTGGAATTGGAAACACAAAATTTGGCTACAATGAGACCAACACATCAACCAATTATTATATGCCAAATTTTGTAAAGTTTGGTATTGCACAAAATGGTGAGAAGTTGAGTGAATCTTTGTCAAACACTAGCTTTAATGGTCTTAGTGGTGATTTCAATGTTGTTGGTGGGAAGTTACTAGCACCAATATTTGAGATAATTAATGTGATTGGTAATGGAGAAAAGAGGGTTGGATTTTGGACACCAAATAAAGGGCTTGCTAGAAATTTGGACACACATGACATGAATAATAACATATATTCTAGTTCTAAAGATGATCTTGGATCAATCATATGGCCAGGGGATATATACTCTATTCCAAAGGGATGGGAAATTCCTACTATTGGGAAGAAGTTGAGGATAGGTGTTCCAATTAAAAAAGGAGATAACTACATTGGATTTTTGAGAGTAACTTATGATAATAGTACCAATAAAACAGATGCCACTGGATTCTCTATTGATGTCTTCAAAGCTGTGGTTGATGTTTTGCCTTATGCCTTACCATATGAATTTTTTCAATTTGCCAAACCTAATGGTGAAATGGCAGGAAACTATAATGACTTAATCGCTCAAATTTATTATGGGAAGTATGATGCAGTAGTGGGGGATGTAACAATCACCGCTAACAGATCCAACTATGTTGATTTCACAATGCCATACACAGAATCTGGTGTATCAATGGTTGTTTCTACCAAAGACAGCAGGAGGAAAAATGCATGGGCTTTTTTGAAACCACTGTCATGGGGTCTTTGGGTAACATCAGCTTGCTCATTTGTATTCATTGGATTTGTTGTATGGGTTCTTGAACATAGAGTAAACAACAATTTCAGGGGACCACCCTCTCATCAGATTGGCACTGGCTTATGGTTTTCCTTTTCAACTATGGTCTATGCTCACAGAGAGAAAGTAGTAAGCAACTTGGGTAGATTTGTGGTGGTTGTATGGCTTTTTGTGGTTCTAATTCTAGTTCAAAGTTACACTGCAAGCTTGACTTCACTCTTAACAGTTGAACAACTAAGGCCAACTATTACAGATGTTAACCAACTTCTAAAGAATAAGTTGAATGTTGGCTATATCAAAGGTTCTTTTGTTTATGGAATTTTGAAGGACTTAGGTTTCCCAGACTCTCAGCTGATTACTTATCAATCACCTCAAGAATGTCATGAGCTTTTCCTAAAAGGAAGTGTAAATGGTGGCATTGATGCAGCTTTTTTTGAGATTGCCTATATTAAACACTTTCTTGGAACTTATAGTTGTTCAAAGTATGTCATGGTTGAACCAAGATATAAAACCGGTGGTCTTGGCTTTGCCTTTCCAAAAGGTTCACCTCTTGTAGCTGACATTTCTAGGGCAATTCTAAATGTGACTCAAGGAGGCAAAATGAGAACAATTGAGAATGCATGGTTCAAAGAACCTAGTTGTCTACTTTCTAATTCAGAAATGTCCTCTAATAACAATCTTGGACTTGAAAGCTTTTGGGGACTGTTTCTAATTGCAGGGATTGCTTCCCTATTGGCACTTCTAATCTGTGTGGTAACATTTGTATATCAGCACAAACATATATTGTTAAACAATGATCCAAGCACTTCAATATGGCAACGAGTATGCATCTTGGTAAGGATATTTGATCAAAGAGACTTGGACTGTCACACATTCAAGAAAATTGAAAATAAAATTCAAAGCAGTAATACTCATCATAATAATGATTTAGGTGCAATTGAGGCCTCTCCAGGTACACATTGTCCTCCTAGTCCATCTAGTCAAACTGAATCAAATGTTTCGGTTTATGACGATTTTAGTTTTAGTCCTAACACAGAAATAGATGTTGTGCAAATAACTAATCAAGAAGTTGATCTTGTGAACAACCGTGAAATTAATGATTAA 2880 0.3615 MFGGMAQIRNESNVVVKVGAVLDVSNGTVGIIGLSCINMALSDFYDSHSHYKTRIQIILRDSHKDVVNAAAQALDLIKNEEVQAIMGPITTMEANFVIKLGDKAHIPIVTFSATSPSLASLQSPYFFQISQIDSAQVKAITSIIQAFGWKQVVPIYIDNSFGEGLIPYLTNVLQQANIQIPYLSAISLSATDDAITQELYKIMTTIPTRVFIVHMTPNLGSKLFAMAKKIGMMGQGYVWIVTDSIANLFNSLNFNVWESMEGVIGVRTYIPRTKKLDDFRVRWKRKFISNNPTLVDMNLSIFGVWAYDATIALAMAIEEVGIGNTKFGYNETNTSTNYYMPNFVKFGIAQNGEKLSESLSNTSFNGLSGDFNVVGGKLLAPIFEIINVIGNGEKRVGFWTPNKGLARNLDTHDMNNNIYSSSKDDLGSIIWPGDIYSIPKGWEIPTIGKKLRIGVPIKKGDNYIGFLRVTYDNSTNKTDATGFSIDVFKAVVDVLPYALPYEFFQFAKPNGEMAGNYNDLIAQIYYGKYDAVVGDVTITANRSNYVDFTMPYTESGVSMVVSTKDSRRKNAWAFLKPLSWGLWVTSACSFVFIGFVVWVLEHRVNNNFRGPPSHQIGTGLWFSFSTMVYAHREKVVSNLGRFVVVVWLFVVLILVQSYTASLTSLLTVEQLRPTITDVNQLLKNKLNVGYIKGSFVYGILKDLGFPDSQLITYQSPQECHELFLKGSVNGGIDAAFFEIAYIKHFLGTYSCSKYVMVEPRYKTGGLGFAFPKGSPLVADISRAILNVTQGGKMRTIENAWFKEPSCLLSNSEMSSNNNLGLESFWGLFLIAGIASLLALLICVVTFVYQHKHILLNNDPSTSIWQRVCILVRIFDQRDLDCHTFKKIENKIQSSNTHHNNDLGAIEASPGTHCPPSPSSQTESNVSVYDDFSFSPNTEIDVVQITNQEVDLVNNREIND 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01385 959 MobiDBLite consensus disorder prediction 895 924 - -
Trre13g01385 959 PIRSF IGluLR_plant 1 938 IPR017103 -
Trre13g01385 959 Pfam Receptor family ligand binding region 36 390 IPR001828 -
Trre13g01385 959 Gene3D - 706 808 - -
Trre13g01385 959 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 16 889 IPR015683 -
Trre13g01385 959 FunFam Glutamate receptor 450 571 - -
Trre13g01385 959 FunFam Glutamate receptor 132 288 - -
Trre13g01385 959 FunFam Glutamate receptor 348 449 - -
Trre13g01385 959 SUPERFAMILY Periplasmic binding protein-like II 428 804 - -
Trre13g01385 959 Pfam Ligand-gated ion channel 803 834 IPR001320 GO:0015276|GO:0016020
Trre13g01385 959 Gene3D - 134 299 - -
Trre13g01385 959 CDD PBP1_GABAb_receptor_plant 17 409 IPR044440 -
Trre13g01385 959 Gene3D - 451 571 - -
Trre13g01385 959 CDD GluR_Plant 449 801 - -
Trre13g01385 959 SMART GluR_14 452 803 IPR001320 GO:0015276|GO:0016020
Trre13g01385 959 FunFam Glutamate receptor 571 701 - -
Trre13g01385 959 Pfam Bacterial extracellular solute-binding proteins, family 3 477 802 IPR001638 -
Trre13g01385 959 SUPERFAMILY Periplasmic binding protein-like I 15 443 IPR028082 -
Trre13g01385 959 Gene3D - 572 698 - -
Trre13g01385 959 Gene3D - 348 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01385 Trre-Chr13 11195715 11201360 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01385 16 951 Ion Channels AT2G29110 49.629 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01385 K05387 - tcc:18587654 1078.16