Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01384 ATGGATAATCCCTCAATTATGATATTAATCGTTATAATAACTTGTTGGTGTTTAAATATGTTTGGTGGAATGGCACAAATTAGAAACGAGAGTAATGTTGTAGTCAAAGTTGGAGCTGTACTTGATGTTAGCAATGGAACAGTTGGGATAATAGGATTGAGTTGCATCAACATGGCTCTCTCAGATTTCTATGATTCTCATTCTCATTACAAAACTAGAATTCAAATCATCCTTAGGGATTCTCATAAGGACGTTGTCAATGCCGCTGCACAAGCTTTGGATCTCATAAAAAATGAGGAAGTCCAAGCAATCATGGGACCAATAACCACAATGGAAGCAAATTTTGTGATTAAACTAGGAGATAAAGCACACATACCCATTGTAACATTTTCAGCAACAAGCCCTTCACTAGCATCACTTCAAAGTCCATACTTTTTCCAAATATCACAAATCGATTCAGCTCAAGTTAAAGCAATCACCTCAATTATTCAAGCTTTTGGTTGGAAACAAGTTGTCCCCATTTACATAGACAATAGTTTTGGTGAAGGACTCATACCTTATTTAACCAATGTTCTTCAACAAGCCAATATCCAAATTCCTTATCTAAGTGCAATTTCTCTTTCAGCCACAGATGATGCTATCACTCAAGAACTTTATAAAATAATGACTACTATACCCACTAGAGTATTTATTGTGCACATGACACCAAATCTTGGCTCTAAGCTTTTTGCCATGGCAAAAAAAATTGGGATGATGGGTCAAGGCTATGTTTGGATAGTAACCGATAGTATAGCTAATTTATTCAATTCATTGAATTTTAATGTGTGGGAATCAATGGAAGGAGTAATTGGTGTGAGGACTTATATTCCTAGAACAAAAAAGCTAGATGATTTTAGAGTTAGATGGAAAAGAAAATTCATAAGTAACAATCCAACACTAGTTGACATGAATTTGAGCATTTTTGGAGTATGGGCTTATGATGCCACAATTGCATTAGCAATGGCTATTGAGGAGGTTGGAATTGGAAACACAAAATTTGGCTACAATGAGACCAACACATCAACCAATTATTATATGCCAAATTTTGTAAAGTTTGGTATTGCACAAAATGGTGAGAAGTTGAGTGAATCTTTGTCAAACACTAGCTTTAATGGTCTTAGTGGTGATTTCAATGTTGTTGGTGGGAAGTTACTAGCACCAATATTTGAGATAATTAATGTGATTGGTAATGGAGAAAAGAGGGTTGGATTTTGGACACCAAATAAAGGGCTTGCTAGAAATTTGGACACACATGACATGAATAATAACATATATTCTAGTTCTAAAGATGATCTTGGATCAATCATATGGCCAGGGGATATATACTCTATTCCAAAGGGATGGGAAATTCCTACTATTGGGAAGAAGTTGAGGATAGGTGTTCCAATTAAAAAAGGAGATAACTACATTGGATTTTTGAGAGTAACTTATGATAATAGTACCAATAAAACAGATGCCACTGGATTCTCTATTGATGTCTTCAAAGCTGTGGTTGATGTTTTGCCTTATGCCTTACCATATGAATTTTTTCAATTTGCCAAACCTAATGGTGAAATGGCAGGAAACTATAATGACTTAATCGCTCAAATTTATTATGGGAAGTATGATGCAGTAGTGGGGGATGTAACAATCACCGCTAACAGATCCAACTATGTTGATTTCACAATGCCATACACAGAATCTGGTGTATCAATGGTTGTTTCTACCAAAGACAGCAGGAGGAAAAATGCATGGGCTTTTTTGAAACCACTGTCATGGGGTCTTTGGGTAACATCAGCTTGCTCATTTGTATTCATTGGATTTGTTGTATGGGTTCTTGAACATAGAGTAAACAACAATTTCAGGGGACCACCCTCTCATCAGATTGGCACTGGCTTATGGTTTTCCTTTTCAACTATGGTCTATGCTCACAGAGAGAAAGTAGTAAGCAACTTGGGTAGATTTGTGGTGGTTGTATGGCTTTTTGTGGTTCTAATTCTAGTTCAAAGTTACACTGCAAGCTTGACTTCACTCTTAACAGTTGAACAACTAAGGCCAACTATTACAGATGTTAACCAACTTCTAAAGAATAAGTTGAATGTTGGCTATATCAAAGGTTCTTTTGTTTATGGAATTTTGAAGGACTTAGGTTTCCCAGACTCTCAGCTGATTACTTATCAATCACCTCAAGAATGTCATGAGCTTTTCCTAAAAGGAAGTGTAAATGGTGGCATTGATGCAGCTTTTTTTGAGATTGCCTATATTAAACACTTTCTTGGAACTTATAGTTGTTCAAAGTATGTCATGGTTGAACCAAGATATAAAACCGGTGGTCTTGGCTTTGCCTTTCCAAAAGGTTCACCTCTTGTAGCTGACATTTCTAGGGCAATTCTAAATGTGACTCAAGGAGGCAAAATGAGAACAATTGAGAATGCATGGTTCAAAGAACCTAGTTGTCTACTTTCTAATTCAGAAATGTCCTCTAATAACAATCTTGGACTTGAAAGCTTTTGGGGACTGTTTCTAATTGCAGGGATTGCTTCCCTATTGGCACTTCTAATCTGTGTGGTAACATTTGTATATCAGCACAAACATATATTGTTAAACAATGATCCAAGCACTTCAATATGGCAACGAGTATGCATCTTGGTAAGGATATTTGATCAAAGAGACTTGGACTGTCACACATTCAAGAAAATTGAAAATAAAATTCAAAGCAGTAATACTCATCATAATAATGATTTAGGTGCAATTGAGGCCTCTCCAGGTACACATTGTCCTCCTAGTCCATCTAGTCAAACTGAATCAAATGTTTCGGTTTATGACGATTTTAGTTTTAGTCCTAACACAGAAATAGATGTTGTGCAAATAACTAATCAAGAAGTTGATCTTGTGAACAACCGTGAAATTAATGATTAA 2937 0.3592 MDNPSIMILIVIITCWCLNMFGGMAQIRNESNVVVKVGAVLDVSNGTVGIIGLSCINMALSDFYDSHSHYKTRIQIILRDSHKDVVNAAAQALDLIKNEEVQAIMGPITTMEANFVIKLGDKAHIPIVTFSATSPSLASLQSPYFFQISQIDSAQVKAITSIIQAFGWKQVVPIYIDNSFGEGLIPYLTNVLQQANIQIPYLSAISLSATDDAITQELYKIMTTIPTRVFIVHMTPNLGSKLFAMAKKIGMMGQGYVWIVTDSIANLFNSLNFNVWESMEGVIGVRTYIPRTKKLDDFRVRWKRKFISNNPTLVDMNLSIFGVWAYDATIALAMAIEEVGIGNTKFGYNETNTSTNYYMPNFVKFGIAQNGEKLSESLSNTSFNGLSGDFNVVGGKLLAPIFEIINVIGNGEKRVGFWTPNKGLARNLDTHDMNNNIYSSSKDDLGSIIWPGDIYSIPKGWEIPTIGKKLRIGVPIKKGDNYIGFLRVTYDNSTNKTDATGFSIDVFKAVVDVLPYALPYEFFQFAKPNGEMAGNYNDLIAQIYYGKYDAVVGDVTITANRSNYVDFTMPYTESGVSMVVSTKDSRRKNAWAFLKPLSWGLWVTSACSFVFIGFVVWVLEHRVNNNFRGPPSHQIGTGLWFSFSTMVYAHREKVVSNLGRFVVVVWLFVVLILVQSYTASLTSLLTVEQLRPTITDVNQLLKNKLNVGYIKGSFVYGILKDLGFPDSQLITYQSPQECHELFLKGSVNGGIDAAFFEIAYIKHFLGTYSCSKYVMVEPRYKTGGLGFAFPKGSPLVADISRAILNVTQGGKMRTIENAWFKEPSCLLSNSEMSSNNNLGLESFWGLFLIAGIASLLALLICVVTFVYQHKHILLNNDPSTSIWQRVCILVRIFDQRDLDCHTFKKIENKIQSSNTHHNNDLGAIEASPGTHCPPSPSSQTESNVSVYDDFSFSPNTEIDVVQITNQEVDLVNNREIND 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01384 978 FunFam Glutamate receptor 367 468 - -
Trre13g01384 978 Gene3D - 153 318 - -
Trre13g01384 978 SMART GluR_14 471 822 IPR001320 GO:0015276|GO:0016020
Trre13g01384 978 Gene3D - 367 469 - -
Trre13g01384 978 SUPERFAMILY Periplasmic binding protein-like II 447 823 - -
Trre13g01384 978 CDD GluR_Plant 468 820 - -
Trre13g01384 978 FunFam Glutamate receptor 469 590 - -
Trre13g01384 978 MobiDBLite consensus disorder prediction 914 943 - -
Trre13g01384 978 Pfam Receptor family ligand binding region 55 409 IPR001828 -
Trre13g01384 978 Pfam Bacterial extracellular solute-binding proteins, family 3 496 821 IPR001638 -
Trre13g01384 978 FunFam Glutamate receptor 151 307 - -
Trre13g01384 978 PIRSF IGluLR_plant 3 957 IPR017103 -
Trre13g01384 978 Gene3D - 725 827 - -
Trre13g01384 978 SUPERFAMILY Periplasmic binding protein-like I 34 462 IPR028082 -
Trre13g01384 978 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 908 IPR015683 -
Trre13g01384 978 Gene3D - 591 717 - -
Trre13g01384 978 FunFam Glutamate receptor 590 720 - -
Trre13g01384 978 Gene3D - 470 590 - -
Trre13g01384 978 CDD PBP1_GABAb_receptor_plant 36 428 IPR044440 -
Trre13g01384 978 Pfam Ligand-gated ion channel 822 853 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01384 Trre-Chr13 11195658 11201360 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01384 3 941 Ion Channels AT2G29120 48.414 0.0 869
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01384 K05387 - tcc:18587654 1078.16