Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01374 ATGATGTTGAATTCTTGTGGAGAAGATGAATTGTATGAACAATTATGGAAGGCTTGTGCTGGTCCTCATGTTGAAGTTCCTCGTGCAGGACAAATGGTTTACTATTTTCCTCAAGGACACATGGAACAATTAGAAGTATCAACAAATCAAGAACTAAATCAGAGGATTCCATTGTTCAAACTTCCAAACAAGATCCTTTGTCGTGTTATCAATGTTCATTTACTGGCTGAACAAGAAACAGACGAGGTTTATGCACAGATAACTCTGGTTCCGGAATCCAATCAAACCGAGCCTACAAGCCTTGATCCTTGTCCTGCTGAACTTCCAAGACCGAAAACTCACTCCTTCTCGAAGGTCTTAACTAACTCTGATACAAGTACTCATGGTGGCTTTTCTGTTCTTCGGAAGCATGCCACAGAATGTCTTCCTCCTTTGGATTTGTCTCAATCTACTCCAACTCAGGAATTGGTTGCCAGAGACCTTCACAATTATGAATGGCACTTTAAGCATATATTTAGAGGTCAACCGCGTAGACACTTGCTCACAACTGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGCGATACATTTGTGTTTCTGAGAGGGGACAACGGAGAATTACGCGTTGGAGTGAGGCATCTTGCCTCTCCACAGAGCTGCATGCCTTCATCTGTGATTTCTGGTCAGAGCATGCACCTTGGAGTCCTTGCAACTGCATCTCATGCTGCCGCAACTCAAACTCTTTTTGTAGTATACTATAAGCCCAGGATGAGCCAGTTCATTATAACTGTGAATAAGTATATGGAAGCTATCAACCAAAAATATAGTGTTGGCATGAGGTTCAAGATGAGTTTTGATGGGGATGATTCCTCTGAGACTGACAAAAGATTTTCTGGCACAATAGTTGGACAAGAGGATATTTCTTCACACTGGTTGAATTCAAAATGGAGATCACTCAAGGTTCAATGGGATGAGCCTGCATCTATTCCAAGACCTGATAGAATTTCTCCATGGGAGATAGAACCCCTTCTGGCTTCGGTTCCTACATCTCTTCAACCTGCCTCTGCTGCTGTAAAATATAAAAGGCCTAGACTACCTAGTGAAGTTCCAGATTTTGGTGACACAACACTAGGTGACTCTACTTACTGGGAAGCTGGGATGACACAATCAGATGTAACACAAGTTAATATTATGTCGGAAAACAAAAGGAGTGAAAGTATGCATATGTGGCTTCATAAGCAAACTGATAATAGCAGCTGCAATGGTATATCAAGGAATCCGACAGACGGAAGTTGGCTATCCTCTCCTCATTCTAGCGGTCCTTCTCATTTGTGTCAGGACACGACTGATGATAGCAAGAGCGTCAATGTCTCAGCTTGGCCTATTTCAAAAACTCACTCAGAAATATTGAACAACAATGATTATTTGTTTGACAAAGTTGACAAGGAGAACAAAATAGAGACTGCTACAAGCTGTAGATTGTTTGGGATTGATCTTAATGATCGCAGCAGGAACTCTCAAAAGGGATCTGAATATCCAGAAAATGTATTTGGAGTCCCTTCTGAGGGATGTGTTGCCGCTCCCTTGTCAAGAACTGATGCAGACCAAAATAAGTTTGATATCTCAAAGTCTTCAAAAGAAAGGAAACAAGAACAGTTACCAATATCTCCAAATGAAACACAAAGCAAGCAAACCAATAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGCGTTGCAGTGGGTCGTGCGGTGGACTTGACCGCATTGCACGGATACGGTCAGCTTATTGATGAATTGGAGAAACTGTTTGATATAAAGGGACAGATCCAACCTAGGAACAAGTGGGAAATCGTCTTCACTGATGATGAAGGAGATATGATGCTTGTTGGTGATGATCCATGGCCGGAATTTTGCAATATGGTGAAAAGAATCTTCATTTGTTCAAGCCAAGATGTACACAAAATGAGCACAGGAACAAAATTACCTATCTCATCAATAGACGAGACTGTAATAAGCTCAGACACAGCTGAGATATGA 2046 0.4159 MMLNSCGEDELYEQLWKACAGPHVEVPRAGQMVYYFPQGHMEQLEVSTNQELNQRIPLFKLPNKILCRVINVHLLAEQETDEVYAQITLVPESNQTEPTSLDPCPAELPRPKTHSFSKVLTNSDTSTHGGFSVLRKHATECLPPLDLSQSTPTQELVARDLHNYEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGDNGELRVGVRHLASPQSCMPSSVISGQSMHLGVLATASHAAATQTLFVVYYKPRMSQFIITVNKYMEAINQKYSVGMRFKMSFDGDDSSETDKRFSGTIVGQEDISSHWLNSKWRSLKVQWDEPASIPRPDRISPWEIEPLLASVPTSLQPASAAVKYKRPRLPSEVPDFGDTTLGDSTYWEAGMTQSDVTQVNIMSENKRSESMHMWLHKQTDNSSCNGISRNPTDGSWLSSPHSSGPSHLCQDTTDDSKSVNVSAWPISKTHSEILNNNDYLFDKVDKENKIETATSCRLFGIDLNDRSRNSQKGSEYPENVFGVPSEGCVAAPLSRTDADQNKFDISKSSKERKQEQLPISPNETQSKQTNSRSCTKVQMQGVAVGRAVDLTALHGYGQLIDELEKLFDIKGQIQPRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFICSSQDVHKMSTGTKLPISSIDETVISSDTAEI 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01374 681 MobiDBLite consensus disorder prediction 538 573 - -
Trre13g01374 681 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Trre13g01374 681 ProSiteProfiles PB1 domain profile. 571 652 IPR000270 GO:0005515
Trre13g01374 681 FunFam Auxin response factor 114 218 - -
Trre13g01374 681 SMART B3_2 116 218 IPR003340 GO:0003677
Trre13g01374 681 MobiDBLite consensus disorder prediction 421 455 - -
Trre13g01374 681 Pfam Auxin response factor 242 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre13g01374 681 Gene3D - 566 659 - -
Trre13g01374 681 Gene3D - 277 350 - -
Trre13g01374 681 MobiDBLite consensus disorder prediction 539 556 - -
Trre13g01374 681 SUPERFAMILY DNA-binding pseudobarrel domain 105 245 IPR015300 -
Trre13g01374 681 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 659 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre13g01374 681 FunFam Auxin response factor 277 350 - -
Trre13g01374 681 Pfam B3 DNA binding domain 116 215 IPR003340 GO:0003677
Trre13g01374 681 Pfam AUX/IAA family 548 607 IPR033389 -
Trre13g01374 681 Pfam AUX/IAA family 618 656 IPR033389 -
Trre13g01374 681 CDD B3_DNA 114 215 IPR003340 GO:0003677
Trre13g01374 681 MobiDBLite consensus disorder prediction 557 573 - -
Trre13g01374 681 Gene3D - 113 217 IPR015300 -
Trre13g01374 681 FunFam Auxin response factor 566 659 - -
Trre13g01374 681 SUPERFAMILY CAD & PB1 domains 569 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01374 Trre-Chr13 11117112 11121599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01374 2 664 B3 DNA Binding Superfamily AT4G23980 57.270 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre13g01374 B3 8.1e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01374 K14486 - gmx:100803911 977.622