Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01371 ATGCCAATAGGTAAAATGAAGCTTGATGACGATCTTGGTCCTGACCGTGAGGATCATTTTCAAACGGATGATGAAGAAAATCAAGCTGATAGAGATTTTGAAAATGATGATGAAGATGATTATAGTGATTCAGATAAAAATAATTCTCCTCATTCCAATGAGGTTGATTTTAATACCACATGGCCTCAAACCTATAGGACATCTATGGACATGTTAACAAGTGTAAGTGTGACACCAACTGGAATTAGTTTCCTAAAGAGAATTAGTTCAACAGGGAAAAAGGAAAATCAAGATGATTTATATTCCAATTCTTTAACAATACCTCTTATTTATGAGGAAGAAACTTCAATCAAACAAGAGCAGTCAACTTCAACATCTCCTCTTCAATCACTTGTCAGCAGTCCAAAAATCTCTGTCACTGAAATTCCACCACAACAGAGACAATGTTCCTTTGTTCAATCAGTAATTAATGGGACCAATATATTATGTGGAATAGGACTTATGACCATTCCATATGCAGTAAAAGAAGGAGGGTTGTTGAGTCTTTCATTACTGTTATTGTTTGCTCTTATTTGTTGTTATACTGGAATTTTATTGAAGAGATGTTTGGAAAGCTACCCTGGAATAACCAGTTATCCAGATATTGGTCAGGCTGCTTTTGGAATCGTTGGTCGCTTGGGTATTGCGATCATTTTATACATGGAACTATTTGCTTCTTCTGTTGAGTTTTTAATACTTGTAAGTGATAACCTCTCATCACTTTTCCCCAACACCAGTATGACTTTAGCCGGTACAGAACTTGGTGCACATCAAGTTTTCGCCATCACCGCAGCTCTTCTTGTTTTACCAACAGTTTGGTTGAAAAATCTAAGCCTACTTTCATATATTTCAGTTGGAGGAATATTTGCAACAATACTTGTAGCACTTTGCTTGTTTTGGCTTGGTGCAATAGACCATATTGGATATATTAATCAAGAATACAAATTCCTAGACATCGAAAACATATCCGTATCAATTGGTCTATTTGGTTTTGGATTTGCTGGCCATGCTGTTTTTCCAAATATCTATTCATCTATGAAGGAACCATCCAAATTCCCATTAGTTCTATTTATCAGTTTTGCTTTCTGTCTTGTAATGTACCTCAGTGTAGGAATAGTTGGCTATATAATGTTTGGCGAAAAAGCCGAATCTCAGTTTACTTTAAACATGCCGAAAGAGTTATATGCATCCAAGATAGCAATCTGGACAACTGTTGTGACTCCTCTTGCAAAGTATGCCTTAACATTATTGCCTATTGCATCAAGCATAGAGGAACTTGTTCCTTCTAGGCTAGGATGTTATGCTATGTCTATTGTTATCAGAACAGTTTTGGTGATTTCATGTTTAGTTGTGGCTCTCACTTTTCCATATTTTGGTTCTGTGATGGCACTAATTGGTTCTATGATGTCAATGCTAGTTGCACTTATTTACCCTTGCGCATGTTATCTCAAGCTACATAGTGGCAGATTATCCAATATGCAGATAATAAATTGCATTTTGATTATTATTGTGGGGGTGATATGCGCTATGATAGGATCATACTCAGCTACTACAAGAATATCTAGTGGTGGAGACTAA 1617 0.3618 MPIGKMKLDDDLGPDREDHFQTDDEENQADRDFENDDEDDYSDSDKNNSPHSNEVDFNTTWPQTYRTSMDMLTSVSVTPTGISFLKRISSTGKKENQDDLYSNSLTIPLIYEEETSIKQEQSTSTSPLQSLVSSPKISVTEIPPQQRQCSFVQSVINGTNILCGIGLMTIPYAVKEGGLLSLSLLLLFALICCYTGILLKRCLESYPGITSYPDIGQAAFGIVGRLGIAIILYMELFASSVEFLILVSDNLSSLFPNTSMTLAGTELGAHQVFAITAALLVLPTVWLKNLSLLSYISVGGIFATILVALCLFWLGAIDHIGYINQEYKFLDIENISVSIGLFGFGFAGHAVFPNIYSSMKEPSKFPLVLFISFAFCLVMYLSVGIVGYIMFGEKAESQFTLNMPKELYASKIAIWTTVVTPLAKYALTLLPIASSIEELVPSRLGCYAMSIVIRTVLVISCLVVALTFPYFGSVMALIGSMMSMLVALIYPCACYLKLHSGRLSNMQIINCILIIIVGVICAMIGSYSATTRISSGGD 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01371 538 Pfam Transmembrane amino acid transporter protein 148 528 IPR013057 -
Trre13g01371 538 MobiDBLite consensus disorder prediction 27 43 - -
Trre13g01371 538 MobiDBLite consensus disorder prediction 1 60 - -
Trre13g01371 538 FunFam Amino acid transporter AVT1A 147 535 - -
Trre13g01371 538 PANTHER OS05G0424000 PROTEIN-RELATED 157 524 - -
Trre13g01371 538 MobiDBLite consensus disorder prediction 8 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01371 Trre-Chr13 11073729 11078232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01371 6 535 Amino Acid or Auxin Permease AAAP Family AT5G02180 50.991 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01371 K15015 - cave:132161847 578.941