Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01365 ATGATGGTGAAAGTAATGACTTCTAATTGGTCAGAAGGGTCAGAACATCATGAACTTTTAAGGGACCTTTTAGTTGATGATTCTCCTTTACTTATGTTGCCACAAGGGACAGAAAATGAAGTAACCAACACAAGTTATGATGATTCTTCAAAAGACCAAATCGTTAATAGGTTCATTTCAAATATTTATTCAGGTCCTACCATTTCAGATATTGAAAATGCTTTGTTAGTTACTAACCATAGTAACCACTTTCAACAACTTTCATCAACAAGAGTTTCCATATTGAAAAGGAGTTTGAGTAAGATTGAGAATAAGTATACTTTGAAAATCAAATGCTTTGGCAATGGGATGGGTGATGATGGATATAGGTGGAGGAAATATGGTCAAAAATTCATTAAAAATAGCCCAAATCCTAGGTAA 420 0.3333 MMVKVMTSNWSEGSEHHELLRDLLVDDSPLLMLPQGTENEVTNTSYDDSSKDQIVNRFISNIYSGPTISDIENALLVTNHSNHFQQLSSTRVSILKRSLSKIENKYTLKIKCFGNGMGDDGYRWRKYGQKFIKNSPNPR 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01365 139 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 54 139 IPR044810 GO:0003700
Trre13g01365 139 ProSiteProfiles WRKY domain profile. 113 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01365 139 Pfam WRKY DNA -binding domain 119 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01365 139 SUPERFAMILY WRKY DNA-binding domain 116 139 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g01365 139 Gene3D WRKY domain 114 139 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01365 Trre-Chr13 11028026 11028678 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01365 20 139 WRKY Transcription Factor Family AT5G43290 47.967 1.12e-26 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g01365 WRKY 3.1e-07 CL0274