Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01363 ATGATTAAAGTGGCCATTGGTTTGCTAAGTTTCTTAAGTGTTGCAATGACAATCTTTGGAGTTGTTATGGTCTTTCGAGCAAGGAGAATCGTTCGAGACGACAATGATTCCGACATGGGAGGAGGAGGTGATTCATGGCCTTGGCAGTTCACACCATTCCAAAAAGTCAACTTTTGTGTGGAGCAAATTCTAAAGTGTTTGGTAGAATCCAATGTAATTGGCAAAGGGTGTCCAGGGATAGTTTATCGCGGGGAAATGGAAAACGGCGATGTCATTGCTGTAAAACGGCTATGGCCAACAACAACGAAAGCTAGAACCACCACACGATACGATCACAGTCAAAGTGACAAGTTAGCAGTTAATGGAGGAGTTCGTGATTCGTTTTCAGCTGAAGTAAAAACTGTCGGTTCAATTCGCCACAAGAACATTGTGAGGTTCTTGGGTTGCTGTTGGAACAGAAACACAAGGCTGCTTATGTATGATTACATCCCAAATGGGAGTCTAGGAAGTTTACTTCATGAAGGAAATGATAATTGCTTAGATTGGCACATTAGGTTCAAGATAATACTAGGATCAGCTCAAGGTTTAGCTTATTTACACCATGATTGTGCTCCTCCTATTGTTCATAGAGACATTAAGGCCAATAACATCCTCATAGGCCTTGAATTTGAACCATACATAGCTGATTTCGGATTCGCAAAACTTGTTGATGATGGAGATTTCGCGAGATCTTCAAGTACACTAGCCGGTTCTTATGGTTACATAGCTCCTGAGTATGGATACATGATGAAGATAACAGAGAAAAGTGATGTATACAGCTATGGTATAGTTGTATTAGAAGTACTAACAGGTAAACAACCGATCGATCCAACAATACCAGATGGACTTCTCACATTGTTGATTGGGTTAGACAGAAAAGAGGAGGAGTTGAAGTGCAAGATGAAAACTTAA 951 0.4059 MIKVAIGLLSFLSVAMTIFGVVMVFRARRIVRDDNDSDMGGGGDSWPWQFTPFQKVNFCVEQILKCLVESNVIGKGCPGIVYRGEMENGDVIAVKRLWPTTTKARTTTRYDHSQSDKLAVNGGVRDSFSAEVKTVGSIRHKNIVRFLGCCWNRNTRLLMYDYIPNGSLGSLLHEGNDNCLDWHIRFKIILGSAQGLAYLHHDCAPPIVHRDIKANNILIGLEFEPYIADFGFAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLLTLLIGLDRKEEELKCKMKT 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01363 316 Gene3D Phosphorylase Kinase; domain 1 55 162 - -
Trre13g01363 316 Pfam Protein tyrosine and serine/threonine kinase 70 304 IPR001245 GO:0004672|GO:0006468
Trre13g01363 316 SMART serkin_6 67 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01363 316 FunFam Os07g0541700 protein 163 251 - -
Trre13g01363 316 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 50 162 - -
Trre13g01363 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Trre13g01363 316 SUPERFAMILY Protein kinase-like (PK-like) 45 294 IPR011009 -
Trre13g01363 316 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 60 288 - -
Trre13g01363 316 Gene3D Transferase(Phosphotransferase) domain 1 163 313 - -
Trre13g01363 316 ProSiteProfiles Protein kinase domain profile. 67 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01363 Trre-Chr13 11026172 11027303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01363 2 295 Receptor kinase-like Gene Family AT5G56040 45.215 3.08e-83 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g01363 PK_Tyr_Ser-Thr 1.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01363 - - lja:Lj0g3v0313469.1 507.679