Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01350 ATGATTGAGTCATTCATGTCAAAGACAATGATGGAGAAAGTAATGACTTCTACTAATTGGTCAGAAGGGTCAGAACATCATGAACTTTTAAGGGACCTTTTAGTTGATGAGTCTCCTCTACTTATGTTGCCACAAGGGACAGCAACTGAAGTAACCAACACAAGTCATGATGATTCTTCAAAAGACCAAATCTTTAATAGGTTCATTTCAAATATTTATTCAGGTCCTACCATTTCAGATATTGAAAATGCTTTGTTAGTTACTAACCATAGTAACCACTTTCAACAAATTCCATCAACAAGAGTTTCCACACTAGAAAGGAGTTTGAGTAAGATTGAGAATAAGTATACTTTGAAAACCAAATGCTTTGGCAATGGGATGGGTGATGATGGATATAGGTGGAGGAAATATGGTCAAAAATCCATTAAAAATAGCCCAAATCCTAGGAGTTACTATAGGTGCACAAATCCAAGGTTTGGTGCTAAGAAGCAAGTTGAGAGATCCATTGAAGATCCTGACACTCTAATAATCACTTATGAAGGACTTCACTTACATTTCACTTATCCATATTTTTTAGTGGGGCAATCACATCAATCCGTTTCCCACCCACCAATCAAGAAGTCCAAGCCAAATTCTTCACAAGGGCCAACCCAAATCCACGAAGACCAGCTTATACAAAAAGCCCATGAAGCCCAAACTAGTGCTTCTTCAGGACTCATACCACCCAATTCATTGGACTCTACACAAGATAAGGCCCAAAAGATTTTGTGCTCACAAGGATTGCTTGAAGACATGGTTCCACTCATGGTTAGGAACCCCGCAAACAATGTTGATACTTTTTAG 843 0.3832 MIESFMSKTMMEKVMTSTNWSEGSEHHELLRDLLVDESPLLMLPQGTATEVTNTSHDDSSKDQIFNRFISNIYSGPTISDIENALLVTNHSNHFQQIPSTRVSTLERSLSKIENKYTLKTKCFGNGMGDDGYRWRKYGQKSIKNSPNPRSYYRCTNPRFGAKKQVERSIEDPDTLIITYEGLHLHFTYPYFLVGQSHQSVSHPPIKKSKPNSSQGPTQIHEDQLIQKAHEAQTSASSGLIPPNSLDSTQDKAQKILCSQGLLEDMVPLMVRNPANNVDTF 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01350 280 ProSiteProfiles WRKY domain profile. 123 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01350 280 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 63 217 IPR044810 GO:0003700
Trre13g01350 280 SUPERFAMILY WRKY DNA-binding domain 126 185 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g01350 280 MobiDBLite consensus disorder prediction 226 247 - -
Trre13g01350 280 Gene3D WRKY domain 117 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g01350 280 MobiDBLite consensus disorder prediction 228 247 - -
Trre13g01350 280 Pfam WRKY DNA -binding domain 129 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01350 280 SMART WRKY_cls 128 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g01350 280 MobiDBLite consensus disorder prediction 199 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01350 Trre-Chr13 10908971 10912822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01350 30 272 WRKY Transcription Factor Family AT5G43290 42.969 1.85e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g01350 WRKY 8.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01350 - - tpra:123889134 448.358