Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01349 ATGATGGATCCACATCTTAAAGGGTTTTGTGGTTCCACATATGAGATCCAGTCGAGGAATCAATCTTTGTCTGTTCTTCAGAATCAGAGACTTGAAAATGGTTTTTTTGATCAAAGTAGAGAATTTGGTTCAAATTTGATACCTGCTGATACGCCTTCTTCGACAACAACCTCGATTTCGACGCATGAGGAGCCTTCTCCTGAGGACTGTGAATTTTCTGATTCAGTTTTGAATTACATCAATAACATCCTTATGGAAGAAGATATGGAAGATAAAACTTGTATGCTTCAAGATTCTTTAGATCTTCAAATTGCTGAGAAATCGTTCTATGAAGTGATAGGCGAAAAGTATCCGGTTTCGCCGTTAGGAGAATCTCAAAGTCTTGGTAATCAAATTGATGGTGTTGGAGATAATAGCTTCTTTGATGGTTATGGTACTTGTGTTGATGATGGTGATCTTAGTAGCATTTTTATGAACAATTCTTCGCGCGGAAACATGAGGGAAGTTCAATTTCCTCATCAAGATTTTCCAGTAAATAGCATTTTACAATCTTCTTATAGCTCTACAAATAGTGTAAAAAGTACTCTTGAAGGTCCTCTGGACTCTCCAGATAGTATTCTACAGGTATCACATCAGAATATCGAGAATCAACCGATTTTGCAATTTCAAAAGGGTGTTGAGGAGGCTAATAAGTTTCTCCCTAATGGAAATGGTCTCTATCATAATTTTGATGGTGCCAAATTTTCGACACTAGAGCCTAAAGTGATGAAGGATGACTTATCGGTTAAGGCGGAGAAGGATGAGAGGCAGTCTTTTCTTTTTGGATCCAAAGTAAGGAAGCATCCTCATGGTGAAGAAGTGGATGTCGAAGAAAATAGAAGCATCAAGCAAGCGGCGATTTACTCAGAACCTATGTTGAGGTCAACTATGACTGATACGATCCTGCTTCATAGTTTAGGTGATGGTAAGGATTATTTTACGGCTCGTCGCGAAGCTTTGCAAATTAAGAATAATATGATAATGCTTCCAAGTAATAAATCAAAAGCTCGTACTAGTGGTAAAGGACGAGGTAAAAAACAAAACGGGAAAAAGGAAGTGATTGATTTGAGAACACTACTTATTCTTTGTGCACAAGCAGTTGCAGCAGACGACCATAAAAGCGCACATGAGTTGCTAAAGAAGATCAGGCAGCATTCGAATATTTTCGGAGATGGAAATCAGCGGTTGGCTCATATTTTTGCTGATGGCCTTGAGGCGCGTTTGGCTGGTACAGGAAGCCAAATTTATAAAGGACTAATCAGTAAAAGAACATCAGCTGCCGATTTTCTGAAAGCTTATTATCTATACCTTGCGGCTTGCCCTTTTCGGAAGATGACTAGTTTTGTCTCGAATGTCACTATAATGCGTTCTGCTGCAAGTTCAATGAGGGTCCATGTCATAGATTTTGGTATCCTGTATGGTTTCCAATGGCCTACCCTAATACAAAGACTTTCATTAAGACCTGGAGGACCGCCGAAACTTCGGATTACAGGAATAGACTTTCCACAACCTGGTTTTAGGCCTGCAGAGAGAATCATAGAAACCGGTTCGCGCTTGGCAGCGTATGCTGAATCTTTTAATGTGCCATTCGAGTATAATGCGATAGCGAAAAAATGGGAAACCATTCAGCTAGAGGAACTCAAGATCGAAAAAGATGAATACCTTGTTGTTACCTGTTTTTATCGCGGTAAAAACTTGTTGGATGAATCTGTTGTAGTAGACAGTCCAAGGAATAAAATCCTCAATTTGATAAGGAGGATCAAGCCTGATATATTCATTCATTGCATTATTAATGGAGCCTTTAATGCACCTTTCTTTGTTACTCGATTTAGGGAAGCGTTGTTTCACTTCTCTTCGCTTTTTGATATGCTTGATAGTATTGTGCCTCGTGAGGATTGGGAAAGGATGCTAATTGAGAAAGAGATATTTGGGAAGGAAGCATTGAACGTTATAGCTTGTGAAGGCTGTGAGAGAGTAGAGAGGCCAGAAACATATAGACAGTGGCAAGTTCGTATTCTCCGAGCCGGGTTTTTGCAACAGACATTTGGCAAGAACACGGTGGAAAGGGCTGTGGAGAAAGTAAAGTCTAGTTACCACAAGGATTTTGTAATCGACAAAGATGGCAAGTGGTTATTGAATGGTTGGAAAGGGCGAATCGTTTATGCGCTTTCTTGTTGGAAACCTGCTTGA 2229 0.3979 MMDPHLKGFCGSTYEIQSRNQSLSVLQNQRLENGFFDQSREFGSNLIPADTPSSTTTSISTHEEPSPEDCEFSDSVLNYINNILMEEDMEDKTCMLQDSLDLQIAEKSFYEVIGEKYPVSPLGESQSLGNQIDGVGDNSFFDGYGTCVDDGDLSSIFMNNSSRGNMREVQFPHQDFPVNSILQSSYSSTNSVKSTLEGPLDSPDSILQVSHQNIENQPILQFQKGVEEANKFLPNGNGLYHNFDGAKFSTLEPKVMKDDLSVKAEKDERQSFLFGSKVRKHPHGEEVDVEENRSIKQAAIYSEPMLRSTMTDTILLHSLGDGKDYFTARREALQIKNNMIMLPSNKSKARTSGKGRGKKQNGKKEVIDLRTLLILCAQAVAADDHKSAHELLKKIRQHSNIFGDGNQRLAHIFADGLEARLAGTGSQIYKGLISKRTSAADFLKAYYLYLAACPFRKMTSFVSNVTIMRSAASSMRVHVIDFGILYGFQWPTLIQRLSLRPGGPPKLRITGIDFPQPGFRPAERIIETGSRLAAYAESFNVPFEYNAIAKKWETIQLEELKIEKDEYLVVTCFYRGKNLLDESVVVDSPRNKILNLIRRIKPDIFIHCIINGAFNAPFFVTRFREALFHFSSLFDMLDSIVPREDWERMLIEKEIFGKEALNVIACEGCERVERPETYRQWQVRILRAGFLQQTFGKNTVERAVEKVKSSYHKDFVIDKDGKWLLNGWKGRIVYALSCWKPA 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01349 742 MobiDBLite consensus disorder prediction 42 63 - -
Trre13g01349 742 Pfam GRAS domain family 369 740 IPR005202 -
Trre13g01349 742 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 286 733 IPR005202 -
Trre13g01349 742 ProSiteProfiles GRAS family profile. 360 740 IPR005202 -
Trre13g01349 742 MobiDBLite consensus disorder prediction 42 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01349 Trre-Chr13 10901565 10903793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01349 31 741 GRAS Transcription Factor Family AT2G37650 50.000 0.0 653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre13g01349 GRAS 3.9e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01349 - - gmx:100807788 1090.87