Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01334 ATGTCGGATATTCACTTGGAAATGAAGGATAGGCAGCGGTGGAGAGCGGAAGAGGATGCATTACTACGCGCTTATGTCAAACAGTACGGTCCTAGGGAATGGAACCTTGTGTCTCAGCGCATGAACACGCCTCTTAATAGGGACGCAAAATCGTGTTTAGAACGGTGGAAGAATTACCTTAAGCCTGGTATTAAGAAAGGATCTCTTACCGAGGAAGAACAGCGCCTTGTCATTAGCCTTCAAGCGACACACGGAAACAAATGGAAGAAAATCGCCGCGCAAGTCCCTGGTCGCACTGCTAAGAGGTTAGGGAAGTGGTGGGAAGTATTCAAAGAGAAGCAACAGAGAGAAACAAAAGGTAGTATTAACAGAACCGTAGACCCGATTAACGATAGCAAGTACGAACATATACTTGAAAGTTTTGCCGAGAAACTAGTAAAAGAGAGACCTTCACCGTCGTTTGTCATGGCTGCATCCAACAGTTCATATCTGCATACCGATGCACCACCAACACCGGGATTGCTTCCTTCATGGCTTTCGAATTCCAACAATGCCGCACCTGTTAGGCCAAATTCACCATCAGTGACATTAAGCCTCTCTCCATCGACAGTTGCAGCACCTCCTCCATGGATGCAGCAACCCATACGAGGACCAGACAACACTCCTCTTGTCCTTGGGAGCGTAGCTCCTCATGGAGCTGTTCTATCTTACGGTGAAAACATGGTGATGTCTGAGTTGGTGGATTGCTGTAAGGAGTTGGAAGAAGTTCATCATGCATTGGCAGCACATAAGAAAGAAGCGGCGTGGAGGTTAAGCCGAGTGGAGCTGCAGTTAGAATCAGAGAAAGCTAGTCGAAGAAGGGAGAAGATGGAGGAGATTGAAGCAAAGATAAAAGCTTTAAGGGACGAACAAGCGGTTGCGTTGGATAGAATTGAAGGAGAATATCGGGAACAGTTAGCAGGATTGAGAAGAGATGCAGAAACCAAAGAACAGAAACTGGCTGAACAATGGGCTGCGAAGCATTTGCGCCTCACGAAGTTTCTAGAACAAGTAGGGTGTAGATCAAGGCTTGCTGAACAAAATGGAAGATAA 1092 0.4652 MSDIHLEMKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVISLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGSINRTVDPINDSKYEHILESFAEKLVKERPSPSFVMAASNSSYLHTDAPPTPGLLPSWLSNSNNAAPVRPNSPSVTLSLSPSTVAAPPPWMQQPIRGPDNTPLVLGSVAPHGAVLSYGENMVMSELVDCCKELEEVHHALAAHKKEAAWRLSRVELQLESEKASRRREKMEEIEAKIKALRDEQAVALDRIEGEYREQLAGLRRDAETKEQKLAEQWAAKHLRLTKFLEQVGCRSRLAEQNGR 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01334 363 CDD SANT 70 111 IPR001005 -
Trre13g01334 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Trre13g01334 363 Gene3D - 11 65 - -
Trre13g01334 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 60 IPR017930 -
Trre13g01334 363 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Trre13g01334 363 SMART sant 10 62 IPR001005 -
Trre13g01334 363 SMART sant 65 113 IPR001005 -
Trre13g01334 363 Coils Coil 312 332 - -
Trre13g01334 363 CDD SANT 13 60 IPR001005 -
Trre13g01334 363 SUPERFAMILY Homeodomain-like 11 105 IPR009057 -
Trre13g01334 363 Gene3D - 69 128 - -
Trre13g01334 363 Coils Coil 273 310 - -
Trre13g01334 363 FunFam MYB-related transcription factor 11 65 - -
Trre13g01334 363 ProSiteProfiles Myb-like domain profile. 6 60 IPR001005 -
Trre13g01334 363 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 8 360 - -
Trre13g01334 363 Pfam Myb-like DNA-binding domain 14 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01334 Trre-Chr13 10722272 10723363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01334 8 354 MYB Transcription Factor Family AT2G37630 67.120 3.29e-160 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g01334 Myb_DNA-bind_6 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01334 K09422 - gmx:100819082 614.379