Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01331 ATGGAGGTTGATTCAGAGGAGTTGTGTTGTATGGAGAATAAGCAATCGACAGTTGCTTCTTGCTCGTCTGTGTCTGAAGGGAGTGGATGTGGCAGTGGAATTCAAAAGTCGCCGGGGATATGTAGCCCCACGGCTACTTCGAGATCGCCTTCACATCGGAGGACAACGGGTCCTATAAGGCGTGCTAAGGGTGGTTGGACAGCAGAGGAGGATGAGACATTGAGGAATGCTGTTGCAGCTTTTAAGGGAAAACATTGGAAGAAAATAGCTGAGTTTTTTAAAGATAGATCGGAAGTTCAATGTCTGCACAGATGGCAAAAAGTTCTTAATCCAGATCTTGTTAAAGGACCGTGGACACAGGAGGAGGATGATAAAATTGTTGAACTGGTGTCAAAATATGGGCCTACAAAATGGTCCTTGATTGCCAAGTCTTTGCCTGGTCGAATAGGGAAGCAGTGTCGAGAGAGGTGGCACAATCATCTTAATCCTGAAATAAAGAAGGATGCCTGGACTTTGGAAGAGGAACTAGCCTTGATGAATGCTCATCGTATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCCTGGAAGGACTGATAATGCAATAAAGAACCACTGGAATAGTTCTTTGAAGAAGAAGTTGGATTTTTACTTAGCCACAGGAAAACTTCCACCAATTCCAAAAAGCAATCCACTAGTTGCTGCCAAAGATACAATTAAACGTTCTGCTACTAAACCAATACTTGTTTCATCTAATAAAGAATTAAATGTCGCTGTTGAAACATCGTCTGAAACCACAGCCATTAGTAAGCAAGATGACAGCGGCAAGAACCAGTTTGAGTCCTCAGGGACAGCTAGAGAAGTCGGTGATTCTTCAAGTGTACCGACAAATGAATCTGCTGATTTTGACTGTGTAGAATGCAAGCCTGGACCATCCAATGTTGATCTTAGCTGTGGAAACTCAGAACATATATCAAGAGTCAATTTTGGAACAACTTATGGACCAAAATCTGAGAATTCTGCACTCAATGGAAACTCAATGACTGAGCATTGTTTAAACAATGGTAAAATGAGCAATAGCAGTAGCAGGTTAACCAGGACATCGGCACAAGAAAATCAGACTTGTGGTTCTTTGTATTATGAGCCACCATTTTTACCTGGTTCAGTTCCTTTAGATTCACTTCATTTAAGTATTCTCTGCATGCAGAATGATTACTGTTCTAAGTTGTCACCCATGGGTTACATCACTCCACCTCGTGCTAGGGATAGTGACTTATGTACGGAGACCCCTGAATCAATATTGAGAAAGGCTGCTAATACTTATCCAAATACTCCTTCCATATATAGGAGGAGAAGAACTGGAGTCCAACCACTTACTTCTCCTAGTAAAGTTTTAAAAGTCGACAATGATTCACATGCTTCTAATGAACCAGGTAGAACCAAGAATAATTCTGGTTCTGAAGCTCGGACGTTGTCTGATAGTCCTGCAAGCCATGGTGATAAAAGTGTTAATCTCAATAATAAGGCATTCAATGCATCTCCACCATACCGGTTAAGAACCAAACGAACAGCAGTTGTTAAGTCTGTGGAGAAACAACTTGAATTTGCATTTGACAAAGAGAAAAATGATGACAGTATGAGCGCAATGGAAAAATCTGCAAAGAGGAGCAATGTTATGAATGAGGATTGTCTGCATGAAAGAAAGTTGGTAGTGACGTAG 1725 0.4133 MEVDSEELCCMENKQSTVASCSSVSEGSGCGSGIQKSPGICSPTATSRSPSHRRTTGPIRRAKGGWTAEEDETLRNAVAAFKGKHWKKIAEFFKDRSEVQCLHRWQKVLNPDLVKGPWTQEEDDKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPEIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYLATGKLPPIPKSNPLVAAKDTIKRSATKPILVSSNKELNVAVETSSETTAISKQDDSGKNQFESSGTAREVGDSSSVPTNESADFDCVECKPGPSNVDLSCGNSEHISRVNFGTTYGPKSENSALNGNSMTEHCLNNGKMSNSSSRLTRTSAQENQTCGSLYYEPPFLPGSVPLDSLHLSILCMQNDYCSKLSPMGYITPPRARDSDLCTETPESILRKAANTYPNTPSIYRRRRTGVQPLTSPSKVLKVDNDSHASNEPGRTKNNSGSEARTLSDSPASHGDKSVNLNNKAFNASPPYRLRTKRTAVVKSVEKQLEFAFDKEKNDDSMSAMEKSAKRSNVMNEDCLHERKLVVT 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01331 574 ProSiteProfiles Myb-like domain profile. 110 161 IPR001005 -
Trre13g01331 574 MobiDBLite consensus disorder prediction 439 470 - -
Trre13g01331 574 ProSiteProfiles Myb-like domain profile. 162 212 IPR001005 -
Trre13g01331 574 MobiDBLite consensus disorder prediction 439 516 - -
Trre13g01331 574 FunFam Transcriptional activator Myb isoform A 62 114 - -
Trre13g01331 574 SUPERFAMILY Homeodomain-like 112 208 IPR009057 -
Trre13g01331 574 ProSiteProfiles Myb-like domain profile. 58 109 IPR001005 -
Trre13g01331 574 MobiDBLite consensus disorder prediction 478 515 - -
Trre13g01331 574 Gene3D - 62 114 - -
Trre13g01331 574 Gene3D - 115 166 - -
Trre13g01331 574 FunFam Transcription factor MYB3R-2 168 232 - -
Trre13g01331 574 SUPERFAMILY Homeodomain-like 64 119 IPR009057 -
Trre13g01331 574 CDD SANT 117 161 IPR001005 -
Trre13g01331 574 Pfam Myb-like DNA-binding domain 63 109 IPR001005 -
Trre13g01331 574 Pfam Myb-like DNA-binding domain 115 161 IPR001005 -
Trre13g01331 574 Pfam Myb-like DNA-binding domain 167 210 IPR001005 -
Trre13g01331 574 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 110 165 IPR017930 -
Trre13g01331 574 SMART sant 114 163 IPR001005 -
Trre13g01331 574 SMART sant 166 214 IPR001005 -
Trre13g01331 574 SMART sant 62 111 IPR001005 -
Trre13g01331 574 PANTHER MYB PROTEIN-RELATED 63 148 - -
Trre13g01331 574 FunFam Transcriptional activator Myb isoform A 115 167 - -
Trre13g01331 574 Gene3D - 168 232 - -
Trre13g01331 574 CDD SANT 66 109 IPR001005 -
Trre13g01331 574 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 109 IPR017930 -
Trre13g01331 574 MobiDBLite consensus disorder prediction 263 299 - -
Trre13g01331 574 CDD SANT 169 212 IPR001005 -
Trre13g01331 574 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 166 216 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01331 Trre-Chr13 10693209 10698598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01331 53 546 MYB Transcription Factor Family AT5G02320 49.903 2.27e-145 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g01331 Myb_DNA-binding 7.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01331 K09422 - gmx:100793280 877.47