Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01329 ATGGTGAGATTAGTGAGCAATGAAAACCTAAAGATCATGGCAAGAAAATACGAAGGTCGTGCCGTGGGAATAGACCTTGGAACGACATACTCTTGTGTTGGAGTGTGGCAGGAGCAACATAGTAGAGTAGAGATAATCCACAATGATCAAGGAAACAGGACAACTCCTTCATTTGTTGCTTTTACTGATGATCAAAGGTTGATTGGTGATGCTGCTAAGAATCAAACTTACGCCAACCCTGAAAACACTGTCTTTGATGCTAAGAGATTAATTGAGACAGAAACTGTTCTTTTCATCTCTGCTGGTTCATCCCAATTGAATCAGTAA 327 0.4037 MVRLVSNENLKIMARKYEGRAVGIDLGTTYSCVGVWQEQHSRVEIIHNDQGNRTTPSFVAFTDDQRLIGDAAKNQTYANPENTVFDAKRLIETETVLFISAGSSQLNQ 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01329 108 Pfam Hsp70 protein 21 92 IPR013126 GO:0005524|GO:0140662
Trre13g01329 108 Gene3D - 5 99 - -
Trre13g01329 108 FunFam heat shock 70 kDa protein-like 15 101 - -
Trre13g01329 108 ProSitePatterns Heat shock hsp70 proteins family signature 1. 24 31 IPR018181 -
Trre13g01329 108 PRINTS 70kDa heat shock protein signature 20 33 - -
Trre13g01329 108 PRINTS 70kDa heat shock protein signature 50 62 - -
Trre13g01329 108 PRINTS 70kDa heat shock protein signature 72 80 - -
Trre13g01329 108 PANTHER HEAT SHOCK PROTEIN 70KDA 21 93 IPR013126 GO:0005524|GO:0140662
Trre13g01329 108 SUPERFAMILY Actin-like ATPase domain 20 94 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01329 Trre-Chr13 10681173 10686187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01329 13 91 Calmodulin-binding Proteins AT3G12580 81.013 1.75e-38 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01329 K03283 - mtr:11439799 138.272