Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01323 ATGGGTAACAGAATCAGCAGCCTCTGCCTCTGTTCTACCGGCGCCGGAGAAATCTCCGGCAAGTTATATAATAGCTTTGCCTTGTTCTCCAAGAAACAAGACAAAGCTATTTGTAACTCCATCTCCTATGTGAGACCGAACCCGCCTGGATTCTCCGGCGACACATTCTCGGAAGAGGACGAAGATACCCTGGTGACTTTCCGGTCGGTCTTCGGAGCCACTGTGAGTGCAAACTCCTCATCAACATCTTCCATTTTCCTTGATGACTCTCTTCAACACAGCACTGTTTTGGATTCCTCTGCTTCATTTGAAAGCTTTGGTTCATTCACTTCCACAATGATGCATCCTCAACATCAACATCAGAATGATGATCCTCGCAGTTCTTCTGTGTGTGGATCCATTGAAAAAGGGTTAGCTTGGAGTCCTTTTAATCCTATGTTCAATGATGATGATGATGTTTACTCCATTGAAAAAGCTTCAGAACATGTGAAGATAAAGAAGCCTAATAAGATCAGCTTGAAGAAGGTTCTAAGTAGAGTTTTTTCAAATACAGTATCTTCTGAAAAAGGATCAATTTTTAAGAATAGTGATAATGTTAATCCAAATGCAAGAGTGAGTTGTAGTACTAGTTTGAGTGATGAACTGAGATTGCATAATAATAACTATTTGGATGATTATGATGATGATGGTGGATATGAATGTGAGAATCTTCATATGGCTCAAGGAAAAGGCGGTGAGGATCGTATGCATATTGTGATTTGTGAGGAACATGGATGGATTTTTGTAGGAATTTATGATGGATTTAATGGTCCTGATGCAACTGATTATCTTCTTAATAATATGTTTTATGCAGTACATGATGAGCTTAAAGGGTTTCTATGTAATCGAAATCGAAATAGTAGTAATAATGTGAAAAGTGAAGAGGGTTTTAGTCATATAGATGTGTTAGAAGCTCTTTCTGAGGCAATGAAAAAAACTGAGGATGCATTTTTGAATATAATTAATGAGATGATTAATCATAATCCTGTTTTAGCTATGATGGGATCTTGTGTTTTGGTTATGTTGATGAAAGGTGAAGATGTTTATTTGATGAATGTTGGTGATAGTCGCGCTGTTTTAGCTACTCGGATTGGGAATCATCCTCAACTCACCATGGATCATAGCACTCATGTGAAAGAGGAGGTTTATAGAATAAGACAGGAGCATCCAGATGATCCTTCTGCGGTAACTAAAGGCCGAGTGAAAGGTTACTTGAATATCACAAGGGCTTTTGGAGCAGGATTCCTTAAGCAGCCTAAACAAAATGATGCAATGTTAGAGACTTTCAAAGTTAACTACATAGGAGAATCTCCTTATATCATATGCTCCCCTTCATTACACCACCAAAGGCTTAGCTCAAGTGACAAATTTCTTATACTGTCTTCTGATGGACTTTACCAATACTTCACAAATGAAGAAGCAGTTGCTAAAGTAGAGTCATTCATCACCATGTTTCCAGATAAAAATCCAGCACAACTTCTCATTGAAGAAGCACTTAGTCAAGCAGCCAAAAAAGCAGGTATGGAGTTCCATGAGTTGCTTGATATACCACAAGGGGAAAGAAGGCTATACCATGATGACATTTCCATTGTCATAATATCCTTGGAGGGAAAAACATGGCGTTCATTAGTGTAA 1674 0.3847 MGNRISSLCLCSTGAGEISGKLYNSFALFSKKQDKAICNSISYVRPNPPGFSGDTFSEEDEDTLVTFRSVFGATVSANSSSTSSIFLDDSLQHSTVLDSSASFESFGSFTSTMMHPQHQHQNDDPRSSSVCGSIEKGLAWSPFNPMFNDDDDVYSIEKASEHVKIKKPNKISLKKVLSRVFSNTVSSEKGSIFKNSDNVNPNARVSCSTSLSDELRLHNNNYLDDYDDDGGYECENLHMAQGKGGEDRMHIVICEEHGWIFVGIYDGFNGPDATDYLLNNMFYAVHDELKGFLCNRNRNSSNNVKSEEGFSHIDVLEALSEAMKKTEDAFLNIINEMINHNPVLAMMGSCVLVMLMKGEDVYLMNVGDSRAVLATRIGNHPQLTMDHSTHVKEEVYRIRQEHPDDPSAVTKGRVKGYLNITRAFGAGFLKQPKQNDAMLETFKVNYIGESPYIICSPSLHHQRLSSSDKFLILSSDGLYQYFTNEEAVAKVESFITMFPDKNPAQLLIEEALSQAAKKAGMEFHELLDIPQGERRLYHDDISIVIISLEGKTWRSLV 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01323 557 SUPERFAMILY PP2C-like 245 549 IPR036457 -
Trre13g01323 557 Coils Coil 316 336 - -
Trre13g01323 557 ProSiteProfiles PPM-type phosphatase domain profile. 229 548 IPR001932 -
Trre13g01323 557 CDD PP2Cc 245 548 IPR001932 -
Trre13g01323 557 Pfam Protein phosphatase 2C 282 517 IPR001932 -
Trre13g01323 557 PANTHER PROTEIN PHOSPHATASE 2C 200 546 IPR015655 GO:0004722|GO:0006470
Trre13g01323 557 Gene3D - 209 554 IPR036457 -
Trre13g01323 557 SMART PP2C_4 230 546 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01323 Trre-Chr13 10611955 10614366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01323 1 557 PP2C-type Phosphatase Gene Family AT1G07630 43.175 4.06e-166 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01323 - K01102 gmx:100804061 634.024