Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01320 ATGCCTCCGTTTCATATATCCAACAACCTTCGCCTTCGCAATTTTTTCATTTTATTCAGAAAACAGTTTGCATTCGTCGCATTCGCTTTGTTCCTTCTATTCTCTTTCGCTTTTCTCACTCGATCCAATAATCTTCACTCTCACTCCAATTCCATCCTCATTCCATTCACCCCTCTCACCAACTTCAAACAAATTGGCGCACTTTGTTTGGATGGCAGTTCTCCTGGTTACCATTTCCAAAACGGTTTTGGATCCGGATCTCATAATTGGCTGCTTCACGTCGAGGGAGGAGGGTGGTGCAATTCAATAGCGTCCTGTTCTTATAGAAAAATGACTGCTTTGGGATCATCCAAGTATATGGATACACCGGTTCCTTTTTCAGGGATTCTAAGCTCTGTTCCTTCTCAAAATCCTGATTTCTTTAACTGGAACAAGGTGAAGATACGCTATTGTGATGGTGCATCCTTTGCTGGTCACCCAGAAAGTGAGAAGAAAGGAAGTGGGTTGTTCTTCAGAGGCCAAATCATATGGGAAGCTATTATGAATGAACTATTATCAATTGGAATGTCTAAAGCGAAACAGGCTCTGTTGTCAGGATGCTCTGCTGGAGGATTGGCAACTCTTATACATTGTGATAACTTCCGAAAATTACTCCCGAAGGAGGCCAATGTCAAGTGTCTTGCGGATGCAGGCTTCTTCCTTGATGAGAAGGATATTCTCGGAAATAGCACAATGAGATCTTTCTATCATGATGTTGTCCAGCTCCAGGGTGTTGAAAAAAGTTTGCACAAAGAGTGCCTTGCTAAAATGGAACCATCTAAGGCAGAAATTCTGAAAAACATAAAGACTCCTGTTTTCCTTGTTCATCCAGCTTATGATTTTTGGCAGATACACAATATTTTGGTACCTCAAGGATCAGATCCCCATCGTCGCTGGAAAAGATGCAGATTGAACATTCACAATTGTGATGCTGACCTGATTGGTAAACTTGACAGTTTCCGTAGTTCTTTACTGAAGACTGTGAATGAATTCCAGCAACGAAAGGATATTGGAATGTTTATAGATTCCTGCTTTATCCATTGCCAGACTTGGATGGGAGAGACATGGCATTCACCTACTTCTCCAAAAATAAAAGATAAGACAATTGCTGAATCTGTTGCCGATTGGTTCTTTCACCAACAAGTGGTAAATCTTATTGATTGCCCTTATCCATGTAATCCTACTTGCCATAATATGGATTTCAGCAGAGGATAA 1254 0.4099 MPPFHISNNLRLRNFFILFRKQFAFVAFALFLLFSFAFLTRSNNLHSHSNSILIPFTPLTNFKQIGALCLDGSSPGYHFQNGFGSGSHNWLLHVEGGGWCNSIASCSYRKMTALGSSKYMDTPVPFSGILSSVPSQNPDFFNWNKVKIRYCDGASFAGHPESEKKGSGLFFRGQIIWEAIMNELLSIGMSKAKQALLSGCSAGGLATLIHCDNFRKLLPKEANVKCLADAGFFLDEKDILGNSTMRSFYHDVVQLQGVEKSLHKECLAKMEPSKAEILKNIKTPVFLVHPAYDFWQIHNILVPQGSDPHRRWKRCRLNIHNCDADLIGKLDSFRSSLLKTVNEFQQRKDIGMFIDSCFIHCQTWMGETWHSPTSPKIKDKTIAESVADWFFHQQVVNLIDCPYPCNPTCHNMDFSRG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01320 417 PANTHER NOTUM-RELATED 53 412 IPR004963 GO:0016787
Trre13g01320 417 Pfam Pectinacetylesterase 49 394 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01320 Trre-Chr13 10605414 10609904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01320 39 381 Carbohydrate Esterase AT3G09410 62.931 9.75e-163 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01320 K19882 - gmx:100792819 612.453