Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01317 ATGTCTCCACCAGGTTCATCAAGATGGAGCCCTACTACTGAACAGCTTATGATTTTAGAAGAACTGTATAGAAGTGGAATTAGAACTCCTAGTGCTTCTCAAATTCAGCAAATAACTACTCATCTTTCTTTCTATGGTAGAATAGAAGGAAAAAATGTTTTCTATTGGTTTCAGAATCATAAAGCTAGGGATAGGCAGAAATTAAGAAGGAAACTTAACAAACAACTGCAGCTACAGCAGCAACAACAGCAGCAGCATCAACATCAACAACAATTACAAGTTCATCATTATCAACTCAATCATGATAATATGATTAGTAACCATTTTGTTGGTACTACTTTTGGTTACCCTTTTGGATCTAATGCACAAGACTTTTCATTTTTTAACTCACCTACTAGCTTGCTTTTTGAGGGATCAGTAGCTGCAAACACATCACAAGGAGCAATGAATTGCAAATGGATCAATGGTTATAATAATAACCATCAAAGTTTGGTGGAGAAGAAAGATATTGCATTGAACAATGATTGGAAACTTGTGGATAATGTTAATCATGAAACAACTTCATGTTGCACTAAACCTATCAAGACTCTTGATCTTTTCCCACTCACAACAAGAATTAAAGAAGACTAG 630 0.3492 MSPPGSSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQKLRRKLNKQLQLQQQQQQQHQHQQQLQVHHYQLNHDNMISNHFVGTTFGYPFGSNAQDFSFFNSPTSLLFEGSVAANTSQGAMNCKWINGYNNNHQSLVEKKDIALNNDWKLVDNVNHETTSCCTKPIKTLDLFPLTTRIKED 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01317 209 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 2 204 IPR044555 GO:0003700|GO:0099402
Trre13g01317 209 Coils Coil 65 89 - -
Trre13g01317 209 CDD homeodomain 8 67 IPR001356 GO:0003677
Trre13g01317 209 SUPERFAMILY Homeodomain-like 7 67 IPR009057 -
Trre13g01317 209 SMART HOX_1 4 71 IPR001356 GO:0003677
Trre13g01317 209 ProSiteProfiles 'Homeobox' domain profile. 2 67 IPR001356 GO:0003677
Trre13g01317 209 FunFam WUSCHEL-related homeobox 4 6 73 - -
Trre13g01317 209 Pfam Homeodomain 7 66 IPR001356 GO:0003677
Trre13g01317 209 Gene3D - 2 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01317 Trre-Chr13 10592729 10593844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01317 1 204 Wox Gene Family AT2G28610 40.426 1.38e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre13g01317 Homeodomain 6.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01317 - - gmx:102663963 242.662