Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01304 ATGGCCACCATGGAACGCCGAAAAACGCTAACCATGAATTGGGACGGCCTCGGCGACGATGAAGATGATATGCATTTCTTTGAGACCTATAACCGTCTCTCAACTGCCGTCCCTGATGATTTAGCTTCTTCCTCTGATGAAGATGATGATTATGAAGATAGCAGATTATCCTTCGCCTCTGCTGCTTCCTCTTTTGTTCCTGCAAAACATCGAAAACCGGAACTTCCACCGGCATCTGCAATTACTCCGAATTATGATATCTGGATGGCTGCTCCTGGATCGATTACAGAAAGAAGACGAAGATTGCTAGGAAGCATGGGATTGGATGATCATAAGGAAAATCTTAAAGCCACTAGCGACGCCATTGGTCGCGCAATCACGAAAAAGTTCGATAATAGCAATCAAGAAAAAACTCCAACTCCTGCTTCTTCAATTTCGGTCAATTCTGTTACAAATTCATCTTCGTCATCATCTACAGTTTCTGCAACTTCCTCCGGTGGCTCGATTCAACAAAATAGAGAGCAATCTCCTGTTCAATATGTTCTTGTTCGATCACGATCTGAAGGTGATATTGATTTTTTCTCAATGGCAAAATTAAGAAAGGAAGAAATGATTGGAAAAATTTCAAAGCAGAGGTTAACGAGAACCTCTACTGAAATAGGTGTGCCGTGCACGCGTGCACGGCATGTAGATGGAAATAGGATTATTATGAGGGATTCTAATGAATCCTCTATGAGACAGTTACCACCGATGTCACCGGTGGTAACACCTGGTTCAGGAGGAGTTGGAGCATTCTTTTTGATAAAAAATTTAGATACTGGAAAAGAGTTTATTGTAAAGGAATACGGCGAAAATGGAACGTGGAATCGGTTAAGCGATTTAGAGACAGGTAAACAGTTAACAATGGAGGAATTTGAAAACACCGTGGGACATTCTCCGTTTATAAAGGATATAATGAGACGCGGAAATTATGGAAGACATGATGGTTATGGTAAAAAGTTAGCTTCAAATTCTGTTATATTAAGGAGTTTAAGGTTAAGTAAAAGAAAAAGTGCTTCATTGTTGAAGAATATTAAAGGTGTAGCAAGTGGAATTGTTGGTGAACGCGAAAGAGAAATGGCTGCGCCGCAAGTGGTTGAACAACATCAACAAAAGAAACCTGAAGGGAAGAACAAATGGGTTAAGGTTAGACAAAGTGGGAAATCACAAAAGGATCTTTCAGCTTTACATTTGTGTCAAGAGTTTCAAGCACATGAAGGGTGTATTTGGACTATTAAGTTTAGTTTGGATGGAAGGTTTTTGGCTAGCGCGGGCGAAGATAAAGTGATTCATGTTTGGGAAGTTCAAGAATGTGAGGTTATGAGTATGAAACCTGAGGAAGGGAATCTTACTCCTATTCATCCTTCTTTGATGTCTTCTATGGAAAGAGGTGTTGAGACTCAGAATTTGGGGAAGAAGAAAGGGAAATTTGGAAGTAAAAGAGGAGGGAGTGCTGCTATTCCTGAATATGTTCATGTTCCTGAAAATGTTTTTACTTTTTCTGAGAAACCTTATTGTTCTTTTCATGGTCATTTGGATGAAGTTTTGGACTTGTCTTGGTCTAGATCTCAGCTACTTCTTTCATCTTCAATGGACAAGACAGTGAGATTGTGGGACTTGGATACTAAGACATGCTTGAAATTCTTTGCACATAATGATTATGTAACCTGTATTCAATTCAACCCTATGGATGATGATTATTTCATTAGTGGCTCCCTCGATGCTAAGGTCAGAATGTGGAACATCCCTGCTCGTCTTGTCGTTGATTGGACTGACATTCATGAAATGGTTACAGCTGTTTCTTACACCCCTGATGGTCAAGGTGTTCTCGTCGGTACACAAAAGGGAAGTTGTCGTACATATAGCATAGAAGATTACAAATTATCTCAAACAAACACTGTTGAACTTAGAACCAAGAAGAAATCTCAGCTAAAAAAAGTTACTGGTTTTCAGTTTTCCCCAAGTAATCCATCAGAAGTGCTTGTTACTTCAGCTGATTCCAGGATAAGAATTGTGGATGGTATAGAAATTCTTCATAAATTTAAAGGATTTCGAAATGCAAACAGCCAAATGGCAGCTTCATTTAGTCCAAATGGAAGATTCATCATAAGTGCAAGTGAAGATTCACAAGTTTATGTATGGAAGCATGAAGAGCATAAACATTCAAGTACAGGAAAATCTAAAGCTATTCAAATCACTCAATCTCATGAGCATTTTCCATGTAAAGATGTTTCAGTAGCAATACCTTGGCCATGTATGATCAAAGGTGATCCACCACAAATCCCAATTAGTAATGGCAAAAAACACTCAAAAAGAATGCTTCCACCTCTTCCAAAGAAAGGTAACAATAACCATGTAAACGAAAGTGCATCAAATTCGCCAGAGCACGACCCTTCATCGCTATCGCGAAGTGAATCAGGAATAGGTGATTCGTTCTCGAATAGTAAGAGAATGTTGCCACCTAATCCAAAGAAAGAAAGTGAAATAGAAGAAGACGGTGAAGCGATTTCTAGGACGAATTCAGGAATCGGTGATTCGTTTTCTTCGGATCCATCTTCAATTAGATATGGCGATTCACCTTCTATATCGGCTGCAGCTAATCCATCAAGTGATTCTTGGTCTTCTAATTATTCATCATATGATGGTAGTCATGGTTCCTCTGCAATTCATCCTTCAGCATGGGGTTTGGTAATAGTGACGGCCGGATTCGGAGGTGAAATAAGGTGTTATCAGAATTTTGGATTACCAAGAAGGATGGGGAGACAAGTGTTTGGGAGCCCTGCTTAA 2826 0.3956 MATMERRKTLTMNWDGLGDDEDDMHFFETYNRLSTAVPDDLASSSDEDDDYEDSRLSFASAASSFVPAKHRKPELPPASAITPNYDIWMAAPGSITERRRRLLGSMGLDDHKENLKATSDAIGRAITKKFDNSNQEKTPTPASSISVNSVTNSSSSSSTVSATSSGGSIQQNREQSPVQYVLVRSRSEGDIDFFSMAKLRKEEMIGKISKQRLTRTSTEIGVPCTRARHVDGNRIIMRDSNESSMRQLPPMSPVVTPGSGGVGAFFLIKNLDTGKEFIVKEYGENGTWNRLSDLETGKQLTMEEFENTVGHSPFIKDIMRRGNYGRHDGYGKKLASNSVILRSLRLSKRKSASLLKNIKGVASGIVGEREREMAAPQVVEQHQQKKPEGKNKWVKVRQSGKSQKDLSALHLCQEFQAHEGCIWTIKFSLDGRFLASAGEDKVIHVWEVQECEVMSMKPEEGNLTPIHPSLMSSMERGVETQNLGKKKGKFGSKRGGSAAIPEYVHVPENVFTFSEKPYCSFHGHLDEVLDLSWSRSQLLLSSSMDKTVRLWDLDTKTCLKFFAHNDYVTCIQFNPMDDDYFISGSLDAKVRMWNIPARLVVDWTDIHEMVTAVSYTPDGQGVLVGTQKGSCRTYSIEDYKLSQTNTVELRTKKKSQLKKVTGFQFSPSNPSEVLVTSADSRIRIVDGIEILHKFKGFRNANSQMAASFSPNGRFIISASEDSQVYVWKHEEHKHSSTGKSKAIQITQSHEHFPCKDVSVAIPWPCMIKGDPPQIPISNGKKHSKRMLPPLPKKGNNNHVNESASNSPEHDPSSLSRSESGIGDSFSNSKRMLPPNPKKESEIEEDGEAISRTNSGIGDSFSSDPSSIRYGDSPSISAAANPSSDSWSSNYSSYDGSHGSSAIHPSAWGLVIVTAGFGGEIRCYQNFGLPRRMGRQVFGSPA 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01304 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 707 737 IPR001680 GO:0005515
Trre13g01304 941 Gene3D - 361 477 IPR015943 GO:0005515
Trre13g01304 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 561 595 IPR001680 GO:0005515
Trre13g01304 941 FunFam WD repeat-containing protein 44 502 769 - -
Trre13g01304 941 Gene3D - 500 763 IPR015943 GO:0005515
Trre13g01304 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 456 IPR001680 GO:0005515
Trre13g01304 941 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 561 595 - -
Trre13g01304 941 Pfam WD domain, G-beta repeat 413 446 IPR001680 GO:0005515
Trre13g01304 941 Pfam WD domain, G-beta repeat 705 728 IPR001680 GO:0005515
Trre13g01304 941 Pfam WD domain, G-beta repeat 518 552 IPR001680 GO:0005515
Trre13g01304 941 Pfam WD domain, G-beta repeat 558 594 IPR001680 GO:0005515
Trre13g01304 941 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 415 449 - -
Trre13g01304 941 MobiDBLite consensus disorder prediction 834 848 - -
Trre13g01304 941 MobiDBLite consensus disorder prediction 852 897 - -
Trre13g01304 941 MobiDBLite consensus disorder prediction 129 177 - -
Trre13g01304 941 ProSitePatterns Trp-Asp (WD) repeats signature. 434 448 IPR019775 -
Trre13g01304 941 MobiDBLite consensus disorder prediction 772 897 - -
Trre13g01304 941 PRINTS G protein beta WD-40 repeat signature 539 553 IPR020472 -
Trre13g01304 941 PRINTS G protein beta WD-40 repeat signature 434 448 IPR020472 -
Trre13g01304 941 PRINTS G protein beta WD-40 repeat signature 581 595 IPR020472 -
Trre13g01304 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 521 561 IPR001680 GO:0005515
Trre13g01304 941 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 521 555 - -
Trre13g01304 941 PANTHER WD REPEAT DOMAIN 44 20 929 IPR040324 -
Trre13g01304 941 MobiDBLite consensus disorder prediction 795 833 - -
Trre13g01304 941 ProSitePatterns Trp-Asp (WD) repeats signature. 539 553 IPR019775 -
Trre13g01304 941 SMART WD40_4 687 728 IPR001680 GO:0005515
Trre13g01304 941 SMART WD40_4 650 686 IPR001680 GO:0005515
Trre13g01304 941 SMART WD40_4 555 594 IPR001680 GO:0005515
Trre13g01304 941 SMART WD40_4 514 552 IPR001680 GO:0005515
Trre13g01304 941 SMART WD40_4 408 447 IPR001680 GO:0005515
Trre13g01304 941 SMART WD40_4 596 635 IPR001680 GO:0005515
Trre13g01304 941 SUPERFAMILY WD40 repeat-like 409 731 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01304 Trre-Chr13 10490677 10494736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01304 520 725 U-box Gene Family AT2G33340 26.636 3.38e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01304 K20241 - gmx:100782200 1211.44