Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01302 ATGATGATGAATCTGCTCCAAAGCCTCCACTGCCAATTCAAGGGACTTACATTTGTTTTGGTGGAAATTACACTATTTCAAGAAGGAACTGAGTATGCAAGAAGAGTCGAAGAAATTTCGACTGTATTCAAAAACCTACATCATCTTTTAAATTCATTGCATCCTCATCAGGCGAGATCAACACTGATTCACATTATGGAACTTCAGATAGAGCGCCGCAAACAAGCCTTGGAGGACATAAAGAGGAGGAGAGAAGTAGCTCAAAGAATTCTTAACGAGTCCTTAGCAACACTTGATGGTCATTAG 306 0.3987 MMMNLLQSLHCQFKGLTFVLVEITLFQEGTEYARRVEEISTVFKNLHHLLNSLHPHQARSTLIHIMELQIERRKQALEDIKRRREVAQRILNESLATLDGH 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01302 101 Coils Coil 63 90 - -
Trre13g01302 101 Gene3D - 1 92 IPR044888 -
Trre13g01302 101 SUPERFAMILY Mediator hinge subcomplex-like 4 92 IPR037212 GO:0016592
Trre13g01302 101 Pfam MED7 protein 2 90 IPR009244 GO:0003712|GO:0006357|GO:0016592
Trre13g01302 101 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7 3 101 IPR009244 GO:0003712|GO:0006357|GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01302 Trre-Chr13 10473527 10475735 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED7 Trre13g01302 Med7 4.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01302 K15148 - gmx:100792250 120.553