Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01294 ATGGCGCAATCCAAAACTTTCATCGTTCTCCTTCGAAATCTCATCCACATTGCAACCGAAATTGCTCAAATCACCACCTTCAATCCACTCATCAAAACTCAATGCTTTGATCTCAGCCGTAGGATCAATTTCCTTGTTCCTCTCTTTCATCACCTCATTAACGACGTCGTTAATGTCCCTTGTGAAACTATCGTTTCTCTTCAACTTGCTTTTCTTTCTGCTAAGGATTTGCTTCTCTTTTGCTCTCAATCGAGCCAGCTCTACATGATACTGGAGAAGGAGAAACTTAAGTTCAAATTCAATGATCTCGCTTCTCGTTTTGAACAAGCTATAATTGAGCTTTGCTGTGACAAACTTGATATTTCTGAGGACCTCAAGGAGCAGGTTGCACTTGTGACTGCTCAGTTTGGAAGGGCCAAAGAGCAATTTGATTCACCTTGTCTTGAGCTTTATGAGCATTTGTTGCCTATCTATAACCAGAGCTGTGATGTGAATACTGAACCTGCTGCGTTACGTTTAATCTGTGAAAAACTACAATTTGTGAATGTGGAAGATATCAAACAAGAGTCAATTGCCATACATAAAATGATTGTTGATGGACGTGGGGTTCTTGAGAAAAGTGAGGGTTTTGAGAAAAACGCGCAGGGGTTGTCAATAGTGCTGAAAAAAATTGAAAATTTTTTGTCGAAGGAATCTGAAAATAATGGAGGTGGTTGTTTTGAGAAAACCACAAAGGTGTTGTCGAGTGGGGATTCGCCTCCTCACACCGATGAGACATGCGTGAAATTATGTTGTCAGTCGCTAGTTGTGCCGGAGGAGTTTCTCTGCCCAATATCTCTTGAGCTAATGAAAGATCCTGTTATAATATCCACAGGGCAGACATATGAACGAGCTTGCATAAAGAAATGGCTTGATGCAGGGCATCGAACATGTCCCAGTACTCAGCAGATTCTTTCCAGCCCCATCCTCACACCCAACCATGCTTTATACAGCCTGATATCAAACTGGTGTGAGGCAAATGCAGTGGAACCACCTAGAACTAGAAGATTAGGAAATTTCTGGATCTGTAAGGAAACCTCGGACGGCTCTTCTGAATTAATAAATCTTGATACTTTGATGAGGAAACTTACTTCCAGTTACCTCGAGGATCAGCGTTATGCAGCAGGAGAGCTACGTATTCTTGCCAGAAACTCTGATCACAATCGAAATTTGATCGGTGAAGCTGGTGCTATACCCCTCCTTGTTGATCTCCTCTACACTCCTGATGCTGGCACCCAGGAGCATGCGGTTACTGCTCTTCTTAACCTATCGATCTGCGATGAAAACAAAGAGCGCATCATGGCTTCTGAGGAGGCTGTGCCGGGAATCCTTCATGTTCTCAAAAGTGGTAGTATGCAAGCTCGTGAAAATGCAGCAGCCACCTTTTTCAGCATCTCTAAAGCGGATGAGAGCAAAAAGGCAATTGGTGCATCTGGAGCAATCAAGGCACTAGTTACTCTCTTCTGCGAAGGAAGTCAAAGAGGAAAGCTCGATGCTGCCTCAGCACTATTCAATCTGTGTTTATACCATGGGAACAAAGGGCGTGCTATTAAGGCCGGTATTGTGCCCAAATTGGTAGAAATGTTAACAGAACCAGGTGAGATGAGGGATGAGGCATTGGCAATCACGGCTTTAATAGCTAACCACCCGGACGCAATAGAAGCATATAACTCAACGAATGCTATTCCCATTTTGGTGGAATTCATCAGTAATGGGTCTTCCAGGAACAAAGAAAATGCAATTTCGGTGCTTCTGTACCTATGTAGTGGAGATCCACATAACCTGGTGATTGTCGCTTCACTGGGAGTGATCAATCCTCTTTCGGAACTGGCAAAGAATGGTTCAGAAAGGGGAAAGCGGAAAGCTGCACAGCTTCTCGAATTGTTTGGAATTGGGAGACCATTGTGA 1947 0.435 MAQSKTFIVLLRNLIHIATEIAQITTFNPLIKTQCFDLSRRINFLVPLFHHLINDVVNVPCETIVSLQLAFLSAKDLLLFCSQSSQLYMILEKEKLKFKFNDLASRFEQAIIELCCDKLDISEDLKEQVALVTAQFGRAKEQFDSPCLELYEHLLPIYNQSCDVNTEPAALRLICEKLQFVNVEDIKQESIAIHKMIVDGRGVLEKSEGFEKNAQGLSIVLKKIENFLSKESENNGGGCFEKTTKVLSSGDSPPHTDETCVKLCCQSLVVPEEFLCPISLELMKDPVIISTGQTYERACIKKWLDAGHRTCPSTQQILSSPILTPNHALYSLISNWCEANAVEPPRTRRLGNFWICKETSDGSSELINLDTLMRKLTSSYLEDQRYAAGELRILARNSDHNRNLIGEAGAIPLLVDLLYTPDAGTQEHAVTALLNLSICDENKERIMASEEAVPGILHVLKSGSMQARENAAATFFSISKADESKKAIGASGAIKALVTLFCEGSQRGKLDAASALFNLCLYHGNKGRAIKAGIVPKLVEMLTEPGEMRDEALAITALIANHPDAIEAYNSTNAIPILVEFISNGSSRNKENAISVLLYLCSGDPHNLVIVASLGVINPLSELAKNGSERGKRKAAQLLELFGIGRPL 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01294 648 Gene3D - 353 509 IPR011989 -
Trre13g01294 648 SMART Ubox_2 273 336 IPR003613 GO:0004842|GO:0016567
Trre13g01294 648 SMART arm_5 481 521 IPR000225 GO:0005515
Trre13g01294 648 SMART arm_5 562 602 IPR000225 GO:0005515
Trre13g01294 648 SMART arm_5 397 438 IPR000225 GO:0005515
Trre13g01294 648 SMART arm_5 439 480 IPR000225 GO:0005515
Trre13g01294 648 SMART arm_5 522 560 IPR000225 GO:0005515
Trre13g01294 648 FunFam RING-type E3 ubiquitin transferase 355 646 - -
Trre13g01294 648 Pfam Armadillo/beta-catenin-like repeat 398 437 IPR000225 GO:0005515
Trre13g01294 648 Pfam Armadillo/beta-catenin-like repeat 482 520 IPR000225 GO:0005515
Trre13g01294 648 CDD RING-Ubox_PUB 271 323 IPR045210 -
Trre13g01294 648 Gene3D - 528 645 IPR011989 -
Trre13g01294 648 FunFam RING-type E3 ubiquitin transferase 270 342 - -
Trre13g01294 648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 343 IPR013083 -
Trre13g01294 648 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 409 449 IPR000225 GO:0005515
Trre13g01294 648 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842|GO:0016567
Trre13g01294 648 SUPERFAMILY ARM repeat 368 642 IPR016024 -
Trre13g01294 648 PANTHER U BOX DOMAIN-CONTAINING 32 642 - -
Trre13g01294 648 Pfam U-box domain 270 340 IPR003613 GO:0004842|GO:0016567
Trre13g01294 648 SUPERFAMILY RING/U-box 270 343 - -
Trre13g01294 648 Gene3D - 7 117 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01294 Trre-Chr13 10436782 10441381 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01294 12 640 U-box Gene Family AT3G46510 47.426 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01294 - - vum:124836668 748.814