Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01293 ATGCCAATGGCGCAATCCAAAACTTTCATCGTTCTCCTTCGAAATCTCATCCACATTGCAACCGAAATTGCTCAAATCACCACCTTCAATCCACTCATCAAAACTCAATGCTTTGATCTCAGCCGTAGGATCAATTTCCTTGTTCCTCTCTTTCATCACCTCATTAACGACGTCGTTAATGTCCCTTGTGAAACTATCGTTTCTCTTCAACTTGCTTTTCTTTCTGCTAAGGATTTGCTTCTCTTTTGCTCTCAATCGAGCCAGCTCTACATGATACTGGAGAAGGAGAAACTTAAGTTCAAATTCAATGATCTCGCTTCTCGTTTTGAACAAGCTATAATTGAGCTTTGCTGTGACAAACTTGATATTTCTGAGGACCTCAAGGAGCAGGTTGCACTTGTGACTGCTCAGTTTGGAAGGGCCAAAGAGCAATTTGATTCACCTTGTCTTGAGCTTTATGAGCATTTGTTGCCTATCTATAACCAGAGCTGTGATGTGAATACTGAACCTGCTGCGTTACGTTTAATCTGTGAAAAACTACAATTTGTGAATGTGGAAGATATCAAACAAGAGTCAATTGCCATACATAAAATGATTGTTGATGGACGTGGGGTTCTTGAGAAAAGTGAGGGTTTTGAGAAAAACGCGCAGGGGTTGTCAATAGTGCTGAAAAAAATTGAAAATTTTTTGTCGAAGGAATCTGAAAATAATGGAGGTGGTTGTTTTGAGAAAACCACAAAGGTGTTGTCGAGTGGGGATTCGCCTCCTCACACCGATGAGACATGCGTGAAATTATGTTGTCAGTCGCTAGTTGTGCCGGAGGAGTTTCTCTGCCCAATATCTCTTGAGCTAATGAAAGATCCTGTTATAATATCCACAGGGCAGACATATGAACGAGCTTGCATAAAGAAATGGCTTGATGCAGGGCATCGAACATGTCCCAGTACTCAGCAGATTCTTTCCAGCCCCATCCTCACACCCAACCATGCTTTATACAGCCTGATATCAAACTGGTGTGAGGCAAATGCAGTGGAACCACCTAGAACTAGAAGATTAGGAAATTTCTGGATCTGTAAGGAAACCTCGGACGGCTCTTCTGAATTAATAAATCTTGATACTTTGATGAGGAAACTTACTTCCAGTTACCTCGAGGATCAGCGTTATGCAGCAGGAGAGCTACGTATTCTTGCCAGAAACTCTGATCACAATCGAAATTTGATCGGTGAAGCTGGTGCTATACCCCTCCTTGTTGATCTCCTCTACACTCCTGATGCTGGCACCCAGGAGCATGCGGTTACTGCTCTTCTTAACCTATCGATCTGCGATGAAAACAAAGAGCGCATCATGGCTTCTGAGGAGGCTGTGCCGGGAATCCTTCATGTTCTCAAAAGTGGTAGTATGCAAGCTCGTGAAAATGCAGCAGCCACCTTTTTCAGCATCTCTAAAGCGGATGAGAGCAAAAAGGCAATTGGTGCATCTGGAGCAATCAAGGCACTAGTTACTCTCTTCTGCGAAGGAAGTCAAAGAGGAAAGCTCGATGCTGCCTCAGCACTATTCAATCTGTGTTTATACCATGGGAACAAAGGGCGTGCTATTAAGGCCGGTATTGTGCCCAAATTGGTAGAAATGTTAACAGAACCAGGTGAGATGAGGGATGAGGCATTGGCAATCACGGCTTTAATAGCTAACCACCCGGACGCAATAGAAGCATATAACTCAACGAATGCTATTCCCATTTTGGTGGAATTCATCAGTAATGGGTCTTCCAGGAACAAAGAAAATGCAATTTCGGTGCTTCTGTACCTATGTAGTGGAGATCCACATAACCTGGTGATTGTCGCTTCACTGGGAGTGATCAATCCTCTTTCGGAACTGGCAAAGAATGGTTCAGAAAGGGGAAAGCGGAAAGCTGCACAGCTTCTCGAATTGTTTGGAATTGGGAGACCATTGTGA 1953 0.4352 MPMAQSKTFIVLLRNLIHIATEIAQITTFNPLIKTQCFDLSRRINFLVPLFHHLINDVVNVPCETIVSLQLAFLSAKDLLLFCSQSSQLYMILEKEKLKFKFNDLASRFEQAIIELCCDKLDISEDLKEQVALVTAQFGRAKEQFDSPCLELYEHLLPIYNQSCDVNTEPAALRLICEKLQFVNVEDIKQESIAIHKMIVDGRGVLEKSEGFEKNAQGLSIVLKKIENFLSKESENNGGGCFEKTTKVLSSGDSPPHTDETCVKLCCQSLVVPEEFLCPISLELMKDPVIISTGQTYERACIKKWLDAGHRTCPSTQQILSSPILTPNHALYSLISNWCEANAVEPPRTRRLGNFWICKETSDGSSELINLDTLMRKLTSSYLEDQRYAAGELRILARNSDHNRNLIGEAGAIPLLVDLLYTPDAGTQEHAVTALLNLSICDENKERIMASEEAVPGILHVLKSGSMQARENAAATFFSISKADESKKAIGASGAIKALVTLFCEGSQRGKLDAASALFNLCLYHGNKGRAIKAGIVPKLVEMLTEPGEMRDEALAITALIANHPDAIEAYNSTNAIPILVEFISNGSSRNKENAISVLLYLCSGDPHNLVIVASLGVINPLSELAKNGSERGKRKAAQLLELFGIGRPL 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01293 650 SMART arm_5 399 440 IPR000225 GO:0005515
Trre13g01293 650 SMART arm_5 564 604 IPR000225 GO:0005515
Trre13g01293 650 SMART arm_5 524 562 IPR000225 GO:0005515
Trre13g01293 650 SMART arm_5 441 482 IPR000225 GO:0005515
Trre13g01293 650 SMART arm_5 483 523 IPR000225 GO:0005515
Trre13g01293 650 Pfam Armadillo/beta-catenin-like repeat 484 522 IPR000225 GO:0005515
Trre13g01293 650 Pfam Armadillo/beta-catenin-like repeat 400 439 IPR000225 GO:0005515
Trre13g01293 650 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Trre13g01293 650 PANTHER U BOX DOMAIN-CONTAINING 34 644 - -
Trre13g01293 650 FunFam RING-type E3 ubiquitin transferase 357 648 - -
Trre13g01293 650 Gene3D - 355 511 IPR011989 -
Trre13g01293 650 Gene3D - 530 647 IPR011989 -
Trre13g01293 650 SUPERFAMILY ARM repeat 370 644 IPR016024 -
Trre13g01293 650 SUPERFAMILY RING/U-box 272 345 - -
Trre13g01293 650 Pfam U-box domain 272 342 IPR003613 GO:0004842|GO:0016567
Trre13g01293 650 FunFam RING-type E3 ubiquitin transferase 272 344 - -
Trre13g01293 650 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 411 451 IPR000225 GO:0005515
Trre13g01293 650 CDD RING-Ubox_PUB 273 325 IPR045210 -
Trre13g01293 650 Gene3D - 9 119 IPR036537 GO:0007166
Trre13g01293 650 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Trre13g01293 650 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 345 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01293 Trre-Chr13 10436782 10441387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01293 14 642 U-box Gene Family AT3G46510 47.426 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01293 - - vum:124836668 748.814