Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01285 ATGGAGTGTGGTTTAGATCTGCATGCAAAGATGGTGAATGAAACAGAACAAGTTGGTTTTGGAAATTTAGAAGTTTCTGAGAGAGAGTTATGGTTGAATAATACTACAAGTAATCATCATCATGATCATGATGATGATCTTTTAGGTATGAATATGAATGATGATGATGCATCTATGTTCTATGCTGATTTTCCACCTTTACCTGATTTTCCATGCATGTCATCATCATCTTCATCTTCATCATCTTCAACACCATTGAAAACTATTGCATGTACTTCAACTACAACTACTACTTCTTCTTCTTCCTCTGCTTCATCTTCCTCTGCAGCTTCTTGGGCTATTTTGAAATCAGATCTTGAAGAAGATCATGGTGAGAAAATAATGAGTACTCAAAATGGTTACATGCATCAACATCATCATCATCATGCATTAGATCATCATCATGGTCAACAACATGGTCAACATGCAACAACTTTATCATCAACTGCATCTATGGAGATATCTCAACAACAACAAGATCTTGGTGTTTGTGATAACAATCATGCTATTGGTGATGGTGGTGATTGCATGGATGATGATGTTATTATGGATACTTTTGGTTACATGGAGCTTTTAGAAGCAAATGATTTTTTTGATCCTGCATCTATTTTTCAAAATGATGAAGAAAATCCTTTAGTTGATTTCACACAAGAACAACAAATTCAAGTGCAAGATGAGTATCATCATCAACATCAACAAGTTCCAATGATAGTTCATGATGATAGTGAAACAAAACTTCAACAAGAACAAGAAAATAATCATGTTTTTGTTTGTGATGATGTTGCAAACAATGAGGAAGAGAATAATATTCTACAAGGAGATGATGGTGTTGTTAATGATGAGATGAGTAGTGTTTTTTTGGAATGGCTTAAATCTAACAAAGATAGTGTATCTGCAAATGATTTGAGAAATGTGAAGCTTAAGAAATCGACAATCGAAAGTGCTGCGAGACGATTAGGTGGTGGAAAAGAAGGAATGAAACAATTGTTGAAACTTATTCTTGAATGGGTTCAAACTAGTCATCTACAAAACAAAAGACTCAAAGAAAACACCAACATTAACAACACAACATTATCCTCAAATCTTGTTCCTCAAACACAACAATTTCAAGATCCTTGTCAAAACCAAAACACAATTACAAACACTTTTGCACCAGTTGATCAATCAAACACTTGTTTTAACCAAACTTCATGGTTAGATCAAACTCAACCTCTCATTGTAACTCCACAACAATTTACACAACCAATGGTTGGAGCTGGAGTTGGAGTTGGATATGTTAGTGATCCTTATAACACAAATGGTTCTGTTTCAAATAACCTTAACCTTAACCCTAACCCTTACCAACCTGCTGCTACTAATGATCAATATCATCATCATATGTTGGAATCAAATCAATCATGGGGTGCTTCACAATTCAATGTTGCATCAAACTACAATCAATCATTTGTGGAGAACAATAATAGCAATGTGATTCAACCTCATGGTGTGAGTTTTGGAGGATATGGAAATCAATATAATTCTTATCAGTTTTTTCATGGACCTGGAGATAGGTTAATGAAGTTAGGTCCTTCTGCTACAAAAGAAGCTAGAAAGAAGAGAATGGCAAGGCAAAGAAGGTTGTCTCATCATCGGCATCAGAGTAGTAATAATAATCAGCATCATAATCCGAATATTCAAGGTTCTGATTCACTTGCAAGATTGGGAAGTGGTGATAGTTGCACCAATGTTGTTGCTGCTGGCTCTCATCCAAATCCAGCTAATTGGATGTATTGGCAAACTATGCCTGGTGGTGGGGCAGCAGCTTCCTTGGCACCTGTTGTTCCGGCTGAGCCGACGCAGCCTCTGGTGGATCGTGATCGCCCCACCATGCACACACAGAATTCTCATCAGGGTCGAAATGCATCGGATAGGAGACAGGGTTGGAAGCCTGAGAAGAATTTGAGGTTTCTTCTACAAAAGGTGTTGAAGCAAAGTGATGTTGGAAGTTTGGGAAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACACATTTGCCAGAATTGGAGGCAAGAGATGGAATTTCCATTACAATGGAAGACATTGGAACTTCTCGAGTTTGGAATATGCGCTATAGATACTGGCCAAACAACAAAAGTAGAATGTATTTGCTTGAGAATACTGGTGACTTTGTGAAAGCTAATGGACTTCAAGAAGGAGATTTCATAGTTATATACTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGACAACAACAAGGAGCAAAACCAGAGGCCAAAAAAGCAGGAAAATCACAGAAACACCAGCATGGGAATAATTCAGCAAATACAGCTGGAAATGCTGCTGTGGATAATAATGGAACACCATCTTCACCAAAGAGAAAAAAATGA 2439 0.3702 MECGLDLHAKMVNETEQVGFGNLEVSERELWLNNTTSNHHHDHDDDLLGMNMNDDDASMFYADFPPLPDFPCMSSSSSSSSSSTPLKTIACTSTTTTTSSSSSASSSSAASWAILKSDLEEDHGEKIMSTQNGYMHQHHHHHALDHHHGQQHGQHATTLSSTASMEISQQQQDLGVCDNNHAIGDGGDCMDDDVIMDTFGYMELLEANDFFDPASIFQNDEENPLVDFTQEQQIQVQDEYHHQHQQVPMIVHDDSETKLQQEQENNHVFVCDDVANNEEENNILQGDDGVVNDEMSSVFLEWLKSNKDSVSANDLRNVKLKKSTIESAARRLGGGKEGMKQLLKLILEWVQTSHLQNKRLKENTNINNTTLSSNLVPQTQQFQDPCQNQNTITNTFAPVDQSNTCFNQTSWLDQTQPLIVTPQQFTQPMVGAGVGVGYVSDPYNTNGSVSNNLNLNPNPYQPAATNDQYHHHMLESNQSWGASQFNVASNYNQSFVENNNSNVIQPHGVSFGGYGNQYNSYQFFHGPGDRLMKLGPSATKEARKKRMARQRRLSHHRHQSSNNNQHHNPNIQGSDSLARLGSGDSCTNVVAAGSHPNPANWMYWQTMPGGGAAASLAPVVPAEPTQPLVDRDRPTMHTQNSHQGRNASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQQGAKPEAKKAGKSQKHQHGNNSANTAGNAAVDNNGTPSSPKRKK 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01285 812 MobiDBLite consensus disorder prediction 153 172 - -
Trre13g01285 812 Pfam B3 DNA binding domain 665 761 IPR003340 GO:0003677
Trre13g01285 812 FunFam B3 domain-containing transcription factor FUS3 660 775 - -
Trre13g01285 812 MobiDBLite consensus disorder prediction 766 812 - -
Trre13g01285 812 ProSiteProfiles B3 DNA-binding domain profile. 664 766 IPR003340 GO:0003677
Trre13g01285 812 MobiDBLite consensus disorder prediction 135 172 - -
Trre13g01285 812 MobiDBLite consensus disorder prediction 625 655 - -
Trre13g01285 812 MobiDBLite consensus disorder prediction 531 580 - -
Trre13g01285 812 MobiDBLite consensus disorder prediction 563 580 - -
Trre13g01285 812 SUPERFAMILY DNA-binding pseudobarrel domain 663 760 IPR015300 -
Trre13g01285 812 Gene3D - 660 780 IPR015300 -
Trre13g01285 812 MobiDBLite consensus disorder prediction 784 805 - -
Trre13g01285 812 CDD BfiI_C_EcoRII_N_B3 662 763 - -
Trre13g01285 812 SMART B3_2 664 764 IPR003340 GO:0003677
Trre13g01285 812 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 289 782 IPR044800 GO:0003700
Trre13g01285 812 MobiDBLite consensus disorder prediction 544 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01285 Trre-Chr13 10375433 10379309 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01285 28 808 B3 DNA Binding Superfamily AT3G24650 45.205 2.58e-159 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g01285 B3 1.8e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01285 K09287 - psat:127127675 918.302