Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01284 ATGGAGTGTGGTTTAGATCTGCATGCAAAGATGGTGAATGAAACAGAACAAGTTGGTTTTGGAAATTTAGAAGTTTCTGAGAGAGAGTTATGGTTGAATAATACTACAAGTAATCATCATCATGATCATGATGATGATCTTTTAGGTATGAATATGAATGATGATGATGCATCTATGTTCTATGCTGATTTTCCACCTTTACCTGATTTTCCATGCATGTCATCATCATCTTCATCTTCATCATCTTCAACACCATTGAAAACTATTGCATGTACTTCAACTACAACTACTACTTCTTCTTCTTCCTCTGCTTCATCTTCCTCTGCAGCTTCTTGGGCTATTTTGAAATCAGATCTTGAAGAAGATCATGATCATCATCATGGTCAACAACATGGTCAACATGCAACAACTTTATCATCAACTGCATCTATGGAGATATCTCAACAACAACAAGATCTTGGTGTTTGTGATAACAATCATGCTATTGGTGATGGTGGTGATTGCATGGATGATGATGTTATTATGGATACTTTTGGTTACATGGAGCTTTTAGAAGCAAATGATTTTTTTGATCCTGCATCTATTTTTCAAAATGATGAAGAAAATCCTTTAGTTGATTTCACACAAGAACAACAAATTCAAGTGCAAGATGAGTATCATCATCAACATCAACAAGTTCCAATGATAGTTCATGATGATAGTGAAACAAAACTTCAACAAGAACAAGAAAATAATCATGTTTTTGTTTGTGATGATGTTGCAAACAATGAGGAAGAGAATAATATTCTACAAGGAGATGATGGTGTTGTTAATGATGAGATGAGTAGTGTTTTTTTGGAATGGCTTAAATCTAACAAAGATAGTGTATCTGCAAATGATTTGAGAAATGTGAAGCTTAAGAAATCGACAATCGAAAGTGCTGCGAGACGATTAGGTGGTGGAAAAGAAGGAATGAAACAATTGTTGAAACTTATTCTTGAATGGGTTCAAACTAGTCATCTACAAAACAAAAGACTCAAAGAAAACACCAACATTAACAACACAACATTATCCTCAAATCTTGTTCCTCAAACACAACAATTTCAAGATCCTTGTCAAAACCAAAACACAATTACAAACACTTTTGCACCAGTTGATCAATCAAACACTTGTTTTAACCAAACTTCATGGTTAGATCAAACTCAACCTCTCATTGTAACTCCACAACAATTTACACAACCAATGGTTGGAGCTGGAGTTGGAGTTGGATATGTTAGTGATCCTTATAACACAAATGGTTCTGTTTCAAATAACCTTAACCTTAACCCTAACCCTTACCAACCTGCTGCTACTAATGATCAATATCATCATCATATGTTGGAATCAAATCAATCATGGGGTGCTTCACAATTCAATGTTGCATCAAACTACAATCAATCATTTGTGGAGAACAATAATAGCAATGTGATTCAACCTCATGGTGTGAGTTTTGGAGGATATGGAAATCAATATAATTCTTATCAGTTTTTTCATGGACCTGGAGATAGGTTAATGAAGTTAGGTCCTTCTGCTACAAAAGAAGCTAGAAAGAAGAGAATGGCAAGGCAAAGAAGGTTGTCTCATCATCGGCATCAGAGTAGTAATAATAATCAGCATCATAATCCGAATATTCAAGGTTCTGATTCACTTGCAAGATTGGGAAGTGGTGATAGTTGCACCAATGTTGTTGCTGCTGGCTCTCATCCAAATCCAGCTAATTGGATGTATTGGCAAACTATGCCTGGTGGTGGGGCAGCAGCTTCCTTGGCACCTGTTGTTCCGGCTGAGCCGACGCAGCCTCTGGTGGATCGTGATCGCCCCACCATGCACACACAGAATTCTCATCAGGGTCGAAATGCATCGGATAGGAGACAGGGTTGGAAGCCTGAGAAGAATTTGAGGTTTCTTCTACAAAAGGTGTTGAAGCAAAGTGATGTTGGAAGTTTGGGAAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACACATTTGCCAGAATTGGAGGCAAGAGATGGAATTTCCATTACAATGGAAGACATTGGAACTTCTCGAGTTTGGAATATGCGCTATAGCATCAGATACTGGCCAAACAACAAAAGTAGAATGTATTTGCTTGAGAATACTGGTGACTTTGTGAAAGCTAATGGACTTCAAGAAGGAGATTTCATAGTTATATACTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGACAACAACAAGGAGCAAAACCAGAGGCCAAAAAAGCAGGAAAATCACAGAAACACCAGCATGGGAATAATTCAGCAAATACAGCTGGAAATGCTGCTGTGGATAATAATGGAACACCATCTTCACCAAAGAGAAAAAAATGA 2382 0.3715 MECGLDLHAKMVNETEQVGFGNLEVSERELWLNNTTSNHHHDHDDDLLGMNMNDDDASMFYADFPPLPDFPCMSSSSSSSSSSTPLKTIACTSTTTTTSSSSSASSSSAASWAILKSDLEEDHDHHHGQQHGQHATTLSSTASMEISQQQQDLGVCDNNHAIGDGGDCMDDDVIMDTFGYMELLEANDFFDPASIFQNDEENPLVDFTQEQQIQVQDEYHHQHQQVPMIVHDDSETKLQQEQENNHVFVCDDVANNEEENNILQGDDGVVNDEMSSVFLEWLKSNKDSVSANDLRNVKLKKSTIESAARRLGGGKEGMKQLLKLILEWVQTSHLQNKRLKENTNINNTTLSSNLVPQTQQFQDPCQNQNTITNTFAPVDQSNTCFNQTSWLDQTQPLIVTPQQFTQPMVGAGVGVGYVSDPYNTNGSVSNNLNLNPNPYQPAATNDQYHHHMLESNQSWGASQFNVASNYNQSFVENNNSNVIQPHGVSFGGYGNQYNSYQFFHGPGDRLMKLGPSATKEARKKRMARQRRLSHHRHQSSNNNQHHNPNIQGSDSLARLGSGDSCTNVVAAGSHPNPANWMYWQTMPGGGAAASLAPVVPAEPTQPLVDRDRPTMHTQNSHQGRNASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYSIRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQQGAKPEAKKAGKSQKHQHGNNSANTAGNAAVDNNGTPSSPKRKK 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01284 793 Pfam B3 DNA binding domain 644 742 IPR003340 GO:0003677
Trre13g01284 793 MobiDBLite consensus disorder prediction 765 786 - -
Trre13g01284 793 SMART B3_2 643 745 IPR003340 GO:0003677
Trre13g01284 793 MobiDBLite consensus disorder prediction 523 541 - -
Trre13g01284 793 FunFam B3 domain-containing transcription factor FUS3 639 756 - -
Trre13g01284 793 Gene3D - 639 761 IPR015300 -
Trre13g01284 793 MobiDBLite consensus disorder prediction 122 151 - -
Trre13g01284 793 MobiDBLite consensus disorder prediction 132 151 - -
Trre13g01284 793 MobiDBLite consensus disorder prediction 747 793 - -
Trre13g01284 793 MobiDBLite consensus disorder prediction 604 634 - -
Trre13g01284 793 MobiDBLite consensus disorder prediction 542 559 - -
Trre13g01284 793 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 268 763 IPR044800 GO:0003700
Trre13g01284 793 SUPERFAMILY DNA-binding pseudobarrel domain 642 741 IPR015300 -
Trre13g01284 793 MobiDBLite consensus disorder prediction 510 559 - -
Trre13g01284 793 CDD BfiI_C_EcoRII_N_B3 641 744 - -
Trre13g01284 793 ProSiteProfiles B3 DNA-binding domain profile. 643 747 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01284 Trre-Chr13 10375433 10379309 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01284 28 789 B3 DNA Binding Superfamily AT3G24650 45.489 1.94e-158 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g01284 B3 2.4e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01284 K09287 - psat:127127675 907.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01284 13 10375433 10379309 Trre13g01284 13 10375433 10379309 ECH