Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01283 ATGGAGTGTGGTTTAGATCTGCATGCAAAGATGGTGAATGAAACAGAACAAGTTGGTTTTGGAAATTTAGAAGTTTCTGAGAGAGAGTTATGGTTGAATAATACTACAAGTAATCATCATCATGATCATGATGATGATCTTTTAGGTATGAATATGAATGATGATGATGCATCTATGTTCTATGCTGATTTTCCACCTTTACCTGATTTTCCATGCATGTCATCATCATCTTCATCTTCATCATCTTCAACACCATTGAAAACTATTGCATGTACTTCAACTACAACTACTACTTCTTCTTCTTCCTCTGCTTCATCTTCCTCTGCAGCTTCTTGGGCTATTTTGAAATCAGATCTTGAAGAAGATCATGATCATCATCATGGTCAACAACATGGTCAACATGCAACAACTTTATCATCAACTGCATCTATGGAGATATCTCAACAACAACAAGATCTTGGTGTTTGTGATAACAATCATGCTATTGGTGATGGTGGTGATTGCATGGATGATGATGTTATTATGGATACTTTTGGTTACATGGAGCTTTTAGAAGCAAATGATTTTTTTGATCCTGCATCTATTTTTCAAAATGATGAAGAAAATCCTTTAGTTGATTTCACACAAGAACAACAAATTCAAGTGCAAGATGAGTATCATCATCAACATCAACAAGTTCCAATGATAGTTCATGATGATAGTGAAACAAAACTTCAACAAGAACAAGAAAATAATCATGTTTTTGTTTGTGATGATGTTGCAAACAATGAGGAAGAGAATAATATTCTACAAGGAGATGATGGTGTTGTTAATGATGAGATGAGTAGTGTTTTTTTGGAATGGCTTAAATCTAACAAAGATAGTGTATCTGCAAATGATTTGAGAAATGTGAAGCTTAAGAAATCGACAATCGAAAGTGCTGCGAGACGATTAGGTGGTGGAAAAGAAGGAATGAAACAATTGTTGAAACTTATTCTTGAATGGGTTCAAACTAGTCATCTACAAAACAAAAGACTCAAAGAAAACACCAACATTAACAACACAACATTATCCTCAAATCTTGTTCCTCAAACACAACAATTTCAAGATCCTTGTCAAAACCAAAACACAATTACAAACACTTTTGCACCAGTTGATCAATCAAACACTTGTTTTAACCAAACTTCATGGTTAGATCAAACTCAACCTCTCATTGTAACTCCACAACAATTTACACAACCAATGGTTGGAGCTGGAGTTGGAGTTGGATATGTTAGTGATCCTTATAACACAAATGGTTCTGTTTCAAATAACCTTAACCTTAACCCTAACCCTTACCAACCTGCTGCTACTAATGATCAATATCATCATCATATGTTGGAATCAAATCAATCATGGGGTGCTTCACAATTCAATGTTGCATCAAACTACAATCAATCATTTGTGGAGAACAATAATAGCAATGTGATTCAACCTCATGGTGTGAGTTTTGGAGGATATGGAAATCAATATAATTCTTATCAGTTTTTTCATGGACCTGGAGATAGGTTAATGAAGTTAGGTCCTTCTGCTACAAAAGAAGCTAGAAAGAAGAGAATGGCAAGGCAAAGAAGGTTGTCTCATCATCGGCATCAGAGTAGTAATAATAATCAGCATCATAATCCGAATATTCAAGGTTCTGATTCACTTGCAAGATTGGGAAGTGGTGATAGTTGCACCAATGTTGTTGCTGCTGGCTCTCATCCAAATCCAGCTAATTGGATGTATTGGCAAACTATGCCTGGTGGTGGGGCAGCAGCTTCCTTGGCACCTGTTGTTCCGGCTGAGCCGACGCAGCCTCTGGTGGATCGTGATCGCCCCACCATGCACACACAGAATTCTCATCAGGGTCGAAATGCATCGGATAGGAGACAGGGTTGGAAGCCTGAGAAGAATTTGAGGTTTCTTCTACAAAAGGTGTTGAAGCAAAGTGATGTTGGAAGTTTGGGAAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACACATTTGCCAGAATTGGAGGCAAGAGATGGAATTTCCATTACAATGGAAGACATTGGAACTTCTCGAGTTTGGAATATGCGCTATAGATACTGGCCAAACAACAAAAGTAGAATGTATTTGCTTGAGAATACTGGTGACTTTGTGAAAGCTAATGGACTTCAAGAAGGAGATTTCATAGTTATATACTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGACAACAACAAGGAGCAAAACCAGAGGCCAAAAAAGCAGGAAAATCACAGAAACACCAGCATGGGAATAATTCAGCAAATACAGCTGGAAATGCTGCTGTGGATAATAATGGAACACCATCTTCACCAAAGAGAAAAAAATGA 2376 0.3712 MECGLDLHAKMVNETEQVGFGNLEVSERELWLNNTTSNHHHDHDDDLLGMNMNDDDASMFYADFPPLPDFPCMSSSSSSSSSSTPLKTIACTSTTTTTSSSSSASSSSAASWAILKSDLEEDHDHHHGQQHGQHATTLSSTASMEISQQQQDLGVCDNNHAIGDGGDCMDDDVIMDTFGYMELLEANDFFDPASIFQNDEENPLVDFTQEQQIQVQDEYHHQHQQVPMIVHDDSETKLQQEQENNHVFVCDDVANNEEENNILQGDDGVVNDEMSSVFLEWLKSNKDSVSANDLRNVKLKKSTIESAARRLGGGKEGMKQLLKLILEWVQTSHLQNKRLKENTNINNTTLSSNLVPQTQQFQDPCQNQNTITNTFAPVDQSNTCFNQTSWLDQTQPLIVTPQQFTQPMVGAGVGVGYVSDPYNTNGSVSNNLNLNPNPYQPAATNDQYHHHMLESNQSWGASQFNVASNYNQSFVENNNSNVIQPHGVSFGGYGNQYNSYQFFHGPGDRLMKLGPSATKEARKKRMARQRRLSHHRHQSSNNNQHHNPNIQGSDSLARLGSGDSCTNVVAAGSHPNPANWMYWQTMPGGGAAASLAPVVPAEPTQPLVDRDRPTMHTQNSHQGRNASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQQGAKPEAKKAGKSQKHQHGNNSANTAGNAAVDNNGTPSSPKRKK 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01283 791 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 269 761 IPR044800 GO:0003700
Trre13g01283 791 SMART B3_2 643 743 IPR003340 GO:0003677
Trre13g01283 791 ProSiteProfiles B3 DNA-binding domain profile. 643 745 IPR003340 GO:0003677
Trre13g01283 791 MobiDBLite consensus disorder prediction 745 791 - -
Trre13g01283 791 MobiDBLite consensus disorder prediction 523 541 - -
Trre13g01283 791 Gene3D - 639 759 IPR015300 -
Trre13g01283 791 CDD BfiI_C_EcoRII_N_B3 641 742 - -
Trre13g01283 791 FunFam B3 domain-containing transcription factor FUS3 639 754 - -
Trre13g01283 791 MobiDBLite consensus disorder prediction 122 151 - -
Trre13g01283 791 MobiDBLite consensus disorder prediction 132 151 - -
Trre13g01283 791 Pfam B3 DNA binding domain 644 740 IPR003340 GO:0003677
Trre13g01283 791 MobiDBLite consensus disorder prediction 763 784 - -
Trre13g01283 791 MobiDBLite consensus disorder prediction 604 634 - -
Trre13g01283 791 MobiDBLite consensus disorder prediction 542 559 - -
Trre13g01283 791 SUPERFAMILY DNA-binding pseudobarrel domain 642 739 IPR015300 -
Trre13g01283 791 MobiDBLite consensus disorder prediction 510 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01283 Trre-Chr13 10375433 10379309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01283 28 787 B3 DNA Binding Superfamily AT3G24650 45.605 1.79e-160 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g01283 B3 1.7e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01283 K09287 - psat:127127675 899.427