Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01282 ATGAACTCACTATCTCACTTCTTCAATCTCCTCCTCTTGACTCTCCTAATGCCACTTTCCTTTGCTTCCAATTCCTCCAATGAACTCACTACCTTACTTTCATGGACACACTCCCTCCACCCTTTTTCCAATTGGAATCCTCTTGACTCAAATCCATGCAAATGGTCATTCATAACATGTTCATCACAAAATTTAGTAACTGAAATCAATATCCAAAATGTCCAATTAGCCCTTCCTTTTCCTTCAAATATTTCTTCATTTTCCAATCTTCAAAAGCTAGTCATTTCTGGAACAAACCTCACTGGAACTATTCCTTTTGATATTGGTAACTGTCTTAATCTTATAACCATTGATCTTAGCTCAAATAGTCTTGTTGGTCAAATTCCTTCAACTATTGGTAACCTAAAAAATCTTCAAAACTTAGTTTTAAACTCTAACCAATTAACTGGTTCAATACCTATTGAACTTTGTGATTGTGTTAATCTCAAAAACCTTGACATTTTTGATAATGATCTTAGTGGAAATCTTCCTATTGAGTTAGGAAAACTTTCAAATCTTGAAGTTATAAGAGCTGGTGGAAACAAAGATATTGTAGGGAAGATTCCAGAAGAATTAGGTGAATGCAAGAATTTAACTGTTTTAGGCCTTGCAGATACTAAAATTTCAGGTTCAATACCTAATTCATTAGGTAAGCTTATGAAGCTTGAAAAGATTTTGCTTTGGCAAAATAGTTTTGTTGGTAGAATACCTGATGAAATTGGAAACTGTAGTAGTTTGAAGATTCTTGATTTGTCTTTGAATTATTTCTCCGGTGGAATACCGGAGAGTTTAGGGAAACTATCGAATCTTGAAGAGCTTATGTTGAGTAACAATAATGTTTCTGGTTCGATACCAGCTTCGGTTTCGAATTTGACAAATTTGATTCAGTTGCAGTTAGATACAAATGAGATATCAGGTTTGATTCCGGTCGAGATTGGAAAGTTGACAAAGCTAACGGTGTTTTTCGCGTGGCAGAATAAACTTGAAGGTCGAATTCCGTCCGAGTTAGGAGATTGTTTAAGCCTTGAGGCTTTGGATTTGTCTTATAACAAACTCAGTGATAGTTTACCTTCAGGACTTTTTAAGCTTCAGAATTTAACTAAGCTTTTGTTGATTTCTAATGATATCTCAGGTTTCATTCCTCCTGAGATTGGTAACTGTAGTTCCCTTATTCGACTTCGGCTTTTAGATAACAGAATCAGTGGTGAGATACCAAGAGAAATAGGTTTTCTTAATAACCTTAGTTTTCTTGATTTGTCCGAAAATCGTCTTAGTGGTTCGGTACCATTAGAGATTGGAAAATGTAAAGAGCTTCAAATGTTGAATCTAAGTAATAACTCTCTTTCTGGTGATTTGCATGGTTTTTTGTCTTCTCTTACAATGCTAGAGGTTTTGGATGTTTCAATGAATAATTTTTCTGGTGAGGTTCCGATGAGTATTGGTGAATTAACTTCACTTCTTCGAGTTATTTTAAGCAAAAACTCTTTCTCTGGTTCAATTCCTTCAACTCTTGGGAAATGCTCAGGTATTCAACTTCTTGACCTTAGCAGTAACATGTTCTTGGGGAGCATACCGAAAGAATTGTTTCAAATTGAAGCACTTGATATTGCTTTGAATTTGAGTCACAATGCATTATCAGGAGTGATTCCAGTTGAGATTTCTACTTTAAACAAGCTCTCGGTTCTAGACCTTTCACATAACATGTTTCAAGGTGATTTGACGGTGTTTTCAGGCCTCGAAAATCTTGTTTCTTTGAACATTTCATACAACAAATTCACTGGTTATTTACCAGACAACAGGTTGTTTCATCTACTAGCAGCAACCGATTTGGTCGGAAATCAAGGTTTGTGTCCTAATGGTCATGATTCATGTTTCGTTGAAAATGTCGCAATGACAAAGATGTTAAACCGTTCTAATTCTAAGAGGTCGGAGATGATTAAAGTGGCCATTGGTTTGCTAAGTTTCTTAAGTGTTGCAATGACAATCTTTGGAATTGTTACGGTCTTTCGAGCAAGGAGAATCGTTCGAGACGACAATGATTCCGAGATGGGAGGAGGTGATTCATGGCCTTGGCAGTTCACACCTTTCCAAAAAGTCAACTTTTGTGTGGAGCAAATTCTAAAGTGTTTGGTGGAATCCAATGTAATTGGAAAAGGGTGTTCAGGGATAGTTTATCGCGCGGAAATAGAAAACGGCGATGTCATTGCCGTAAAACGGCTATGGCCAACAACAACGACAGATAGATCCACCACAAGATATGATCATAGTCAAAGTGACAAGTTAGCAGTTAATGGAGGAGTTCGTGATTCGTTTTCAGCTGAAGTAAAAACTCTCGGTTCAATTCGCCACAAGAACATTGTGAGAGACATCAAGGCCAACAACATCCTCATAGGCCTTGAATTTGAACCATACATAGCTGATTTCGGACTCGCAAAACTTGTTGACGATGGAGATTTCGCAAGATCTTCAAGTACACTAGCCGGTTCTTATGGTTACATAGCTCCTGAGTATGGATACATGATGAAGATAACAGAGAAAAGTGATGTATACAGCTATGGTATAGTTGTATTAGAAGTACTAACAGGTAAACAACCGATCGATCCAACAATACCAGATGGACTTCACATTGTTGATTGGGTTAGACAGAAAAGAGGAGGAGTTGAAGTACTAGATGAAAACTTAAGAGCAAGACCGGAATCCGAAATCGAAGAAATGTTGCAGACATTAGGTGTTGCATTGTTATGTGTAACCTCAAGCCCTGATGATAGACCTACAATGAAAGATGTTGTTGCAATGATGAAAGAGATTAAACAAGAAAGAGATGAATGTGTGAAGGCTTTTGATGGAACTTCTAGAAATGAAAGTAATCATTGCAATGAAAAAGAATCAGTGGAAATGATGATGAATGATTCATGTCCTACAACAAGTAGTAGCAACATAAATGTGCATTTACATTACTCTCCTCATAGTTCTACAACACTAGATTAA 3027 0.368 MNSLSHFFNLLLLTLLMPLSFASNSSNELTTLLSWTHSLHPFSNWNPLDSNPCKWSFITCSSQNLVTEINIQNVQLALPFPSNISSFSNLQKLVISGTNLTGTIPFDIGNCLNLITIDLSSNSLVGQIPSTIGNLKNLQNLVLNSNQLTGSIPIELCDCVNLKNLDIFDNDLSGNLPIELGKLSNLEVIRAGGNKDIVGKIPEELGECKNLTVLGLADTKISGSIPNSLGKLMKLEKILLWQNSFVGRIPDEIGNCSSLKILDLSLNYFSGGIPESLGKLSNLEELMLSNNNVSGSIPASVSNLTNLIQLQLDTNEISGLIPVEIGKLTKLTVFFAWQNKLEGRIPSELGDCLSLEALDLSYNKLSDSLPSGLFKLQNLTKLLLISNDISGFIPPEIGNCSSLIRLRLLDNRISGEIPREIGFLNNLSFLDLSENRLSGSVPLEIGKCKELQMLNLSNNSLSGDLHGFLSSLTMLEVLDVSMNNFSGEVPMSIGELTSLLRVILSKNSFSGSIPSTLGKCSGIQLLDLSSNMFLGSIPKELFQIEALDIALNLSHNALSGVIPVEISTLNKLSVLDLSHNMFQGDLTVFSGLENLVSLNISYNKFTGYLPDNRLFHLLAATDLVGNQGLCPNGHDSCFVENVAMTKMLNRSNSKRSEMIKVAIGLLSFLSVAMTIFGIVTVFRARRIVRDDNDSEMGGGDSWPWQFTPFQKVNFCVEQILKCLVESNVIGKGCSGIVYRAEIENGDVIAVKRLWPTTTTDRSTTRYDHSQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRDIKANNILIGLEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVLDENLRARPESEIEEMLQTLGVALLCVTSSPDDRPTMKDVVAMMKEIKQERDECVKAFDGTSRNESNHCNEKESVEMMMNDSCPTTSSSNINVHLHYSPHSSTTLD 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01282 1008 SUPERFAMILY Protein kinase-like (PK-like) 718 953 IPR011009 -
Trre13g01282 1008 SMART LRR_typ_2 135 159 IPR003591 -
Trre13g01282 1008 SMART LRR_typ_2 569 591 IPR003591 -
Trre13g01282 1008 SMART LRR_typ_2 496 520 IPR003591 -
Trre13g01282 1008 SMART LRR_typ_2 280 304 IPR003591 -
Trre13g01282 1008 SMART LRR_typ_2 352 376 IPR003591 -
Trre13g01282 1008 SMART LRR_typ_2 424 448 IPR003591 -
Trre13g01282 1008 SMART LRR_typ_2 592 617 IPR003591 -
Trre13g01282 1008 ProSitePatterns Protein kinases ATP-binding region signature. 729 751 IPR017441 GO:0005524
Trre13g01282 1008 ProSiteProfiles Protein kinase domain profile. 582 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01282 1008 Gene3D Ribonuclease Inhibitor 274 372 IPR032675 -
Trre13g01282 1008 PRINTS Leucine-rich repeat signature 424 437 - -
Trre13g01282 1008 PRINTS Leucine-rich repeat signature 355 368 - -
Trre13g01282 1008 Gene3D Phosphorylase Kinase; domain 1 710 802 - -
Trre13g01282 1008 Pfam Leucine rich repeat 523 581 IPR001611 GO:0005515
Trre13g01282 1008 Gene3D Transferase(Phosphotransferase) domain 1 803 982 - -
Trre13g01282 1008 Gene3D Ribonuclease Inhibitor 25 176 IPR032675 -
Trre13g01282 1008 SMART serkin_6 723 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01282 1008 Gene3D Ribonuclease Inhibitor 373 641 IPR032675 -
Trre13g01282 1008 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 228 336 - -
Trre13g01282 1008 FunFam Nuclear pore complex protein NUP107 25 178 - -
Trre13g01282 1008 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 66 194 - -
Trre13g01282 1008 SUPERFAMILY L domain-like 345 660 - -
Trre13g01282 1008 Gene3D Ribonuclease Inhibitor 177 273 IPR032675 -
Trre13g01282 1008 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 354 641 - -
Trre13g01282 1008 SMART LRR_sd22_2 352 381 - -
Trre13g01282 1008 SMART LRR_sd22_2 135 156 - -
Trre13g01282 1008 SMART LRR_sd22_2 569 594 - -
Trre13g01282 1008 SMART LRR_sd22_2 424 445 - -
Trre13g01282 1008 SMART LRR_sd22_2 280 306 - -
Trre13g01282 1008 SUPERFAMILY L domain-like 38 368 - -
Trre13g01282 1008 Pfam Protein tyrosine and serine/threonine kinase 797 944 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01282 Trre-Chr13 10369053 10372579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01282 31 951 Receptor kinase-like Gene Family AT5G56040 42.636 0.0 755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g01282 PK_Tyr_Ser-Thr 5.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01282 - - cit:102618814 1080.47