Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01280 ATGGCTTTCCTCGAAAACCCTTTCTCTCTCTACATTCCCATCTTCATCTTCTTCTGTTTCTGCAACAAAGCTTCAACTAAAACTATACCTCCTTCAACTTCCTCTGATGTTGAACTTCTCTTATTAAAAATCAAACCTTTACTTCAAGGTAACAATGAAAACCTTGTTCTTTCTTCATGGAACACTTCAATACCACTTTGTCAATGGAGAGGACTCAAATGGGTTTTCACAAATGGTTCATCTCTTTCATGCAATGATTTATCTTCACCACAATGGAACAATCTTTTGTTTTTTAAAGACCCTTTTTTGCATTTGTTGTCTCTTCAACTTCCTTCTGCAAATCTCTCTGGTTCTCTCCCTAGAGAGATTGGTCAGTTTCCTATGCTCAAAAGTCTTTATCTTAATATTAATTCATTGAGTGGTACTATTCCTCTTGAACTTGGTTATGGTTCTTCACTTGATGATATTGATTTAAGTGATAATCTTTTAAGTGGTGTTCTTCCACCTTCTATATGGAATTTGTGTGATAAGCTTGTTTCTCTTAAAATTCATGGAAATTTATTATCTGGGTCTGTTTCAGAACCTGCATTACCTGATTCATCTTGTAAATTTTTGCAGTTTCTTGATTTGGGTGGTAATAAATTTTCTGGTAATTTTCCTGATTTTGTTACTAATTTTGGTGCCTTAAAACAGCTTGATTTAGGGAATAATATGTTTAGTGGTGCAATTTCTGAGGGTTTAGTTGGACTTAGGTTAGAAAAATTGAATCTTTCTCATAATAATTTTAGTGGGGTTGTACCGTTTTTTGGAGAATCGAAATTCGGTGTTGATTCTTTTGAAGGGAATAGTCCTGATTTATGTGGTTCACCTTTGAAAAGTTGTAGTAAGAATTCTTCGTTGAGTTCTGGTGCTGTTGCTGGTATTGTTATTAGTCTTATGACAGGTGCTGTTGTTTTGGCTTCATTGTTGATTGGTTATATGCAAAACAAGAAGAAAAAAGGGAGTGGTGAGAGTGAAGATGAATTGAATGATGAAGAAGAAGACGAAGAAAACGGTGGTGGAAATTCGGTTGGTGGAAATGGTGGTGAAGGGAAGCTTATGTTATTTCCTGGTGGTGAGAATTTGACACTTGATGATGTATTGAATGCAACCGGTCAAGTTATGGAGAAGACGTGTTACGGAACAGCTTATAAGGCCAAGCTTGCCGATGGAGGAACAATTGCTTTAAGGTTGTTGAGAGAAGGTACTTGCAAAGATAGGAGTTCGTGTTTGGCGGTTATAAAACAGTTGGGAAAAATTCGACATGAGAATTTGATTCCTTTGAGAGCTTTCTATCAAGGGAAAAGAGGGGAGAAGCTGCTTATTTATGATTATTTACCTCTCAGAACTCTTCATGATCTTTTGCATGAAATTAAAGCAGGAAAACCAGTGCTGAACTGGGCTAGGAGACACAAAATTGCATTAGGTATAGCAAGAGGACTAGCATATCTTCATACAGGACTCGACGATCCTATAACTCACGCAAATGTAAGATCCAAGAACGTGCTTGTGGACGACTTCTTTGTCGCCAGGATCACCGATTTCGCCCTTGATAAGCTAATGATCCCTTCAATAGCCGACGAAATGGTTGCGCTTGCCAAGGCCGATGGCTACAAAGCACCAGAGCTTCAAAGAATGAAGAAATGTAACTCAAGGACCGACGTTTACGCGTTCGGTATATTACTTCTTGAAATCTTGATCGGTAAGAAGCCTGGTAAGAACGGAAGAAGCGGTGAGTACGTAGATTTACCGTCGATGGTGAAAGTAGCGGTTTTGGAGGAAACAACGATGGAAGTGTTTGATGTGGAACTGTTGAAAGGGATAAGAAGTCCAATGGAAGACGGATTGGTTCAAGCGCTGAAGCTAGCGATGGGATGTTGTGCGCCTGTAGCATCGGTAAGACCGAGCATGGAAGAAGTTGTGAGGCAGTTAGAGGAGAACAGACCAAGGAATAGGTCTGCTTTATACAGTCCAACTGAGACAAGAAGTGGGAGTATTACACCATTTTGA 2049 0.3904 MAFLENPFSLYIPIFIFFCFCNKASTKTIPPSTSSDVELLLLKIKPLLQGNNENLVLSSWNTSIPLCQWRGLKWVFTNGSSLSCNDLSSPQWNNLLFFKDPFLHLLSLQLPSANLSGSLPREIGQFPMLKSLYLNINSLSGTIPLELGYGSSLDDIDLSDNLLSGVLPPSIWNLCDKLVSLKIHGNLLSGSVSEPALPDSSCKFLQFLDLGGNKFSGNFPDFVTNFGALKQLDLGNNMFSGAISEGLVGLRLEKLNLSHNNFSGVVPFFGESKFGVDSFEGNSPDLCGSPLKSCSKNSSLSSGAVAGIVISLMTGAVVLASLLIGYMQNKKKKGSGESEDELNDEEEDEENGGGNSVGGNGGEGKLMLFPGGENLTLDDVLNATGQVMEKTCYGTAYKAKLADGGTIALRLLREGTCKDRSSCLAVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPLRTLHDLLHEIKAGKPVLNWARRHKIALGIARGLAYLHTGLDDPITHANVRSKNVLVDDFFVARITDFALDKLMIPSIADEMVALAKADGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKNGRSGEYVDLPSMVKVAVLEETTMEVFDVELLKGIRSPMEDGLVQALKLAMGCCAPVASVRPSMEEVVRQLEENRPRNRSALYSPTETRSGSITPF 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01280 682 Gene3D Transferase(Phosphotransferase) domain 1 460 674 - -
Trre13g01280 682 MobiDBLite consensus disorder prediction 332 361 - -
Trre13g01280 682 MobiDBLite consensus disorder prediction 657 682 - -
Trre13g01280 682 MobiDBLite consensus disorder prediction 663 682 - -
Trre13g01280 682 SUPERFAMILY Protein kinase-like (PK-like) 391 658 IPR011009 -
Trre13g01280 682 Gene3D Ribonuclease Inhibitor 197 296 IPR032675 -
Trre13g01280 682 Gene3D Phosphorylase Kinase; domain 1 371 458 - -
Trre13g01280 682 ProSiteProfiles Protein kinase domain profile. 382 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01280 682 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 661 IPR046959 -
Trre13g01280 682 FunFam Leucine-rich repeat receptor-like protein kinase 202 294 - -
Trre13g01280 682 Pfam Protein tyrosine and serine/threonine kinase 386 657 IPR001245 GO:0004672|GO:0006468
Trre13g01280 682 SUPERFAMILY L domain-like 68 268 - -
Trre13g01280 682 Gene3D Ribonuclease Inhibitor 36 196 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01280 Trre-Chr13 10349500 10352152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01280 10 682 Receptor kinase-like Gene Family AT3G24660 72.997 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre13g01280 PK_Tyr_Ser-Thr 5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01280 - - gmx:100814814 1077.77