Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01279 ATGTCTGGTCAGAGAAGAGATTCAAAGTTCAAAGAGAAACAGATTAATGATCTTGTGTCAAGGTTACAACTACTATTGCCCCAGCTCAACGAAAGAAACAACTCAAGGCAATCAACATCCAAGATCTTGCAGGAAACATTAAATCACATTAGGAGGCTGCAGAAAGAGGTAGAAGATCTAAGTGAAAGGCTAACACAGTTGATGGATTCTGTGGATATCAATGATAGTGACAGAAGAACTTTAGAGAACATTTTGCAACATTAA 264 0.375 MSGQRRDSKFKEKQINDLVSRLQLLLPQLNERNNSRQSTSKILQETLNHIRRLQKEVEDLSERLTQLMDSVDINDSDRRTLENILQH 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01279 87 PANTHER DNA BINDING PROTEIN 1 86 IPR044172 -
Trre13g01279 87 Coils Coil 43 70 - -
Trre13g01279 87 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 71 IPR036638 GO:0046983
Trre13g01279 87 Pfam Helix-loop-helix DNA-binding domain 13 54 IPR011598 GO:0046983
Trre13g01279 87 Gene3D - 4 84 IPR036638 GO:0046983
Trre13g01279 87 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 53 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01279 Trre-Chr13 10318640 10320919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01279 2 72 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 52.778 7.79e-17 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g01279 HLH 3.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01279 - - tpra:123888045 141.739