Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01275 ATGGTAGTCATAGAGCACGAGAAACCCGACGATCGAAACCCGAATCAATCCAACGCAACTGCCGCCGGAACTGACGCCTCCGACGGCTTCGAAACCGCCAGTGAAGCTGATCTCGATAGCGACGTCGACGAAAGTGAATCTAGGAGCCGAGAAGAAGAACAGAAACATCGTCAACAACCGCAGCAGCAGCGGAAGGAAACAGAGGGAGATCATGTACAAGATGTTGATCAGAAAAGTATTTCCTCTGAGGATGCTTTGATCAATGAAGAGGAATTGAGACAGAAAGCATTGGGTGAAGCAAATGAAGCAAAAGTAGAAGGTAACAAACTTTTTGTAGATGGGAAGTATGAGGAGGCATTATCTCAATATGAACATGCTTTACAAGTTGCACCAGACATGCCTTCTTCTGTGGAAATACGCTCAATATGCCATTCAAATCGTGCTGTGTGCTTTTTGAAACTGGGAAAATATGAAAATACAATTAAAGAATGTACAAAAGCGTTGGAACTGAATCCTGCATATGTTAAAGCTTTGGTAAGAAGAGGAGAGGCTCATGAAAAGCTTGAACATTTTGAAGAGGCAATTGCTGATATGAAAAAGATCTTAGAAATCGATCCCTCAAATGATCAAGCTAGGAAAGCCATTCGCCGACTAGAGCCCCTTGCTGCTGTCAAACGGGAAAAAATGAAAGAAGAAATGATTGCAAAATTGAAAGAAATGGGCAATTCTGTCTTGGGACGCTTTGGGATGAGTGTTGACAACTTCAAAGCAGTCAAAGATCCAAACACTGGCTCCTATTCTATTTCAATGGAACGCTAA 819 0.4249 MVVIEHEKPDDRNPNQSNATAAGTDASDGFETASEADLDSDVDESESRSREEEQKHRQQPQQQRKETEGDHVQDVDQKSISSEDALINEEELRQKALGEANEAKVEGNKLFVDGKYEEALSQYEHALQVAPDMPSSVEIRSICHSNRAVCFLKLGKYENTIKECTKALELNPAYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKAIRRLEPLAAVKREKMKEEMIAKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISMER 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01275 272 ProSiteProfiles TPR repeat profile. 141 174 IPR019734 GO:0005515
Trre13g01275 272 SUPERFAMILY TPR-like 98 217 IPR011990 GO:0005515
Trre13g01275 272 Gene3D Tetratricopeptide repeat domain 60 240 IPR011990 GO:0005515
Trre13g01275 272 MobiDBLite consensus disorder prediction 1 81 - -
Trre13g01275 272 Pfam Tetratricopeptide repeat 143 173 IPR001440 GO:0005515
Trre13g01275 272 Pfam Tetratricopeptide repeat 176 208 IPR013105 -
Trre13g01275 272 ProSiteProfiles TPR repeat profile. 100 133 IPR019734 GO:0005515
Trre13g01275 272 SMART tpr_5 175 208 IPR019734 GO:0005515
Trre13g01275 272 SMART tpr_5 100 133 IPR019734 GO:0005515
Trre13g01275 272 SMART tpr_5 141 174 IPR019734 GO:0005515
Trre13g01275 272 ProSiteProfiles TPR repeat profile. 175 208 IPR019734 GO:0005515
Trre13g01275 272 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 12 271 - -
Trre13g01275 272 MobiDBLite consensus disorder prediction 43 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01275 Trre-Chr13 10240761 10244477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01275 100 242 Calmodulin-binding Proteins AT3G25230 39.073 7.53e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01275 K24926 - gmx:100808386 363.999