Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01268 ATGGAAGAAGTTACGATGGATGAAGTTATGATGGATGTCGATGAACAACAGATTGTACCTGATCCTCTACCATTTGCTAGAAGCTATCAGCTTGAAGCACTAGAGCAAGCAGTTCGTGAAAATACAATAGTGTACTTGAAGACCGGATCCGGAAAGACATTGATAGCTATCATGCTTATCCGAAGCTATGCTAGTCACCTCCGGAAGCCTTCTCCATACATTGCTGTTTTTATAGTTCCAAAAGTTGTGTTGATTTCTCAGCAAGCTAAAGCCTTGAGAAACCACACAGATTTAAGCATTGGAATGTATTGCGGAAACATGGGTCGTGACAATTGGGACCGAGATATGTGGAAAGACGAGATGGAGAAACATGAGGTGCTTGTTATGACTCCTGCTATATTGCTTTCATGCTTGAGACATAGCTTTATCAAACTAAATATGATAAAGGTTTTAATCATGGATGAATGCCATCATGTTACGGGTGATCACCCATATGCTTGTGTCATGAATGAATTTTATCATCAAGAATTAAGATCTGGTACCACTGAGCTTCCTCGAATTTTCGGGATGACCGCATCCCCAGTTAAGTCAAAAGCTGCGAATTCTGAGTCCACCTTGTCAGAAAAACTTCGGAAACTAATGACTCTAATGAATTCAAAGGTTTATACACGTGAAAGTGATGCTGTCATCTCAGAGTCTTTTACCCTAAAATTCCGGTATTATAAGGACAATGTAATTTCCAATGCATTAAGCGAAGAATTATCCGAAAAACTCAGCGCATTAAAAAAACAGCACGAGCTTTCTGTGACAAGTTCGGATTTGACAGCTGATTCTGTCAAATCCATAAACAAAAAATTGTCGAAGATTTTCAAATCCTCAATATTTTGCTTGGAACAGCTTGGTGCTTGGTTGGCTTTGAAGGCTATGGAAACCTTATCATCCATTGAAACCTTCACACGCGGTAACTCAGGGTATCACATTGTGAAAAAATTTATTTCGGCTACTATCTTGACACTGCAGACTTACGTACCATCTGATCCTCAATGGAGTATTGGCGAAAATATGAATCCCGACATGGAAATGGGACTATTGACTTCCAAAGTTTCCTGTCTTATTGACTGCCTACTTGAATACAATGGTGTTACCGAAATGAGATGCATTGTATTTGTGGAAAGGGTTATTGTAGCTAGGGTCCTTGAGATTCTACTAAACACTATGCTTCCAAAATACAATAACTGGAAAGTTAGATATATTACTGGCAAGAGTAATGAATTGAAAACCCAATCTCAGAAAATTCAAGATGAAATTGTGGAAGAATTTCGCAAGGGATTGGTAAATGTTATTGTTGCGACATCGGTTCTCGAAGAGGGCTTAGATGTTCAAAGTTGCAACTTGGTTATTAGATTTGACCTACCTCGAAATGTGTGCAGTTTTGTACAGTCCAGAGGCCGTGCTAGAATGCACAATTCAGATTACATATTGATGTTACAGAGCGGCGATTCAGCTGCACATTCTCGAATACAAAAATACATTTCTAGTGAGGAAATGATGAGGAAGGAGTCTTTGCATTATTCTTCCCTTCCATGCGAGACTCTTGAAAATGATCGTTTTGATGAGCAAGCTTACCGTGTTGCTAGCACCGGAGCTGTTGTTAATCTTCATTCGAGCATTTCTTTGATAATGTTATATTGTGCACGGCTCCCTGCAGATGGGTATTTTAAACCATATCCGAGGTGGGACAAACAAGAAGGAATATTGTATCTTCCTAAGAGCTGTCCTCTAGAGGCTATTCACGTACAAGGTGAACCGAAGTTCTTAAAGAATATTGCATGCCTTGAAGCATGCAAACAACTTCATAAGATTGGAGCCTTGACGGATAATCTTGTTCCTTCTATTCTCGTTGAAGAAGCAAAGGTGGTTGAATTTGGGAATGAACCGTATGATGAAGAACAACCAAGTTTTGTACCACCTGAATTCGTCAATCGTGTGTCAAACAATAGTAACACAAACTACTATTGTTATTTGATAGAGCTAAAACAAGATTTTAGCTATGATATCACGACGCAAGACATTTTTCTTGCAACAAGAGTCAATTTGGACTCGGAAATCGGACGCATGAAATTTGATATGCTTTTCAATAGAGGTAGCTTGTATGTAAACTTGAAATACAAAGGAAAAATCAACCTCTCACCAGATCAGGTTCTTTTGTGTAAAAAATTCCAAGTGAATATCCTTGGAATTCTTATGAATTCTAAAATGTATAAGGAATCTGATCTAGAGATATCTTGTTCGGAAAATGATCTTCAAATCGATTATCTCCTACTTCCATCTATTGCAAAAGATGATACACTAGTTTTTGATTGGTCAACAATTTGTTCTATTCATCCAAATATCTTCATGTGTTTGCACAATGAAGCGAAGATACGAACCACAGAGAGTTTGGTTTGCCAATGCAAATTGCAGAATGCTTTGATTTATACTCCACATAATGGCCTTACTTACATCACCACTGATGTATCGGATTTGAATGGAAACTCACCTATAGAACTAGGGGATGGTCATGTTACTACATACAAGAACTACTATGCAAAAAGGTATGGCATTCGTTTCAATTTTGAACATCAACGCCTACTTAGAGCAAGACATGTTTTTCCTGTAAAAAATTATACTCATGGATGCAGAGTGAAAGAAAGAGATGTGAGCAAGAACTTTGTGTTATTACCTCCCGAACTATGCGTTATAATCATGTCGCCAATTTCTGTTAGCACAATTTATTCTTTTTCATTTATTCCATCAATCATGCATCGAATTGAGTCGTTGCTTGCAGCTTTCAACTTCATAAAGATGCATTTGGTTCATTGCCCTCAAAATAGAATACAAACATTCAAGGTCTTAGAAGCAATGACTGCAAAGTCATGCTACGAGACCTTCGGTTATGAGACTCTCGAAACACTCGGTGATTCGTTTTTGAAATATGCTGTTAGTCAACAACTGTTTCATATGTATGAAAATCAGCATGAGGGTCTTCTTAGTGTGAAGAGGGAGAAGATTATTTCTAATGCTTCTCTCTGTAAGTTAGGTTGCGATTCTGGACTTCCGGGCTTCATTCGGACTGAGCCGTTTGATACTAAGACATGGATCATCCCGGGAGCTAAATCAAGGGATTTTAAATTAGAAGAGATTTCTTACAAGGGAGGCAAGGTTTATACCCGAGGAACTAGAAAACTGAAAAAAAAAGTTGTTGCTGATGTGGTTGAAGCACTAATCGGTGCCTTCCTCAGCGCTGGTGGAGAAATGGCTGCGTTGCTGTTTATGGATTGGGTTGGAATCAAAATTAATTTTAACATTTCACCGTATGAGACAAAATGCAGTGCCAATCCCGAGATTGTTCTTAATATCGCTTTCTTAGAATCCATATTGAAGTACTCTTTTGTGGATCGTTCTCTATTAGTAGAAGCTATGACTCATGGTTCATACATGCTGCACGATGTTCCAAGATGCTATCAGCGATTGGAATATTTAGGGGACGCAGTGTTGGATTATCTGATCACAGTGCATTTGTACAAAGAATACCCTGGCATGTCACCCGGGATGTTAACAGACATGAGGGCTGCCTCGGTGAACAATGACTGTTATGCGAGGTCTGCCATAAGGGTCCAACTGCATAAACATGTACTCCATACCTCTCACGAGTTACATAAGCATATTGCAGTCGCACTTACAAAATACAACGAACTATCTTCATCATCAACTTTTGGATGGGAGTCCGACGCATCATTCCCCAAGGTACTTGGCGACATCATAGAATCTCTAGCTGGTGCTATACTTGTAGATTCAGGATACAACAAGGAGGTTGTGTGGGAAAGCATAAGACCTCTTTTGGAACCACTTGTGACACCTGAGACATTAAAGCTCCATCCCATTAGAGAATTAACCGAATTTTGCCAAATTAGGAATTATAAAATGGAGAAAACATTTTCCCGCAACGATGACATTACTACTTGTAGAATCAATATAATAACTGTGGATGGTGTAACTCATCAATATGAGTATAAAGGTTCTACTGATAAAAAAACTGCCACAAGACTAGCTTGCAAGACAGCTTTGAATTCCTTGAAGTTGAAGGAAACACAAGACATGTTACTATGTTAG 4152 0.3875 MEEVTMDEVMMDVDEQQIVPDPLPFARSYQLEALEQAVRENTIVYLKTGSGKTLIAIMLIRSYASHLRKPSPYIAVFIVPKVVLISQQAKALRNHTDLSIGMYCGNMGRDNWDRDMWKDEMEKHEVLVMTPAILLSCLRHSFIKLNMIKVLIMDECHHVTGDHPYACVMNEFYHQELRSGTTELPRIFGMTASPVKSKAANSESTLSEKLRKLMTLMNSKVYTRESDAVISESFTLKFRYYKDNVISNALSEELSEKLSALKKQHELSVTSSDLTADSVKSINKKLSKIFKSSIFCLEQLGAWLALKAMETLSSIETFTRGNSGYHIVKKFISATILTLQTYVPSDPQWSIGENMNPDMEMGLLTSKVSCLIDCLLEYNGVTEMRCIVFVERVIVARVLEILLNTMLPKYNNWKVRYITGKSNELKTQSQKIQDEIVEEFRKGLVNVIVATSVLEEGLDVQSCNLVIRFDLPRNVCSFVQSRGRARMHNSDYILMLQSGDSAAHSRIQKYISSEEMMRKESLHYSSLPCETLENDRFDEQAYRVASTGAVVNLHSSISLIMLYCARLPADGYFKPYPRWDKQEGILYLPKSCPLEAIHVQGEPKFLKNIACLEACKQLHKIGALTDNLVPSILVEEAKVVEFGNEPYDEEQPSFVPPEFVNRVSNNSNTNYYCYLIELKQDFSYDITTQDIFLATRVNLDSEIGRMKFDMLFNRGSLYVNLKYKGKINLSPDQVLLCKKFQVNILGILMNSKMYKESDLEISCSENDLQIDYLLLPSIAKDDTLVFDWSTICSIHPNIFMCLHNEAKIRTTESLVCQCKLQNALIYTPHNGLTYITTDVSDLNGNSPIELGDGHVTTYKNYYAKRYGIRFNFEHQRLLRARHVFPVKNYTHGCRVKERDVSKNFVLLPPELCVIIMSPISVSTIYSFSFIPSIMHRIESLLAAFNFIKMHLVHCPQNRIQTFKVLEAMTAKSCYETFGYETLETLGDSFLKYAVSQQLFHMYENQHEGLLSVKREKIISNASLCKLGCDSGLPGFIRTEPFDTKTWIIPGAKSRDFKLEEISYKGGKVYTRGTRKLKKKVVADVVEALIGAFLSAGGEMAALLFMDWVGIKINFNISPYETKCSANPEIVLNIAFLESILKYSFVDRSLLVEAMTHGSYMLHDVPRCYQRLEYLGDAVLDYLITVHLYKEYPGMSPGMLTDMRAASVNNDCYARSAIRVQLHKHVLHTSHELHKHIAVALTKYNELSSSSTFGWESDASFPKVLGDIIESLAGAILVDSGYNKEVVWESIRPLLEPLVTPETLKLHPIRELTEFCQIRNYKMEKTFSRNDDITTCRINIITVDGVTHQYEYKGSTDKKTATRLACKTALNSLKLKETQDMLLC 1383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01268 1383 Pfam DEAD/DEAH box helicase 28 172 IPR011545 GO:0003676|GO:0005524
Trre13g01268 1383 SUPERFAMILY dsRNA-binding domain-like 1262 1375 - -
Trre13g01268 1383 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 33 212 IPR014001 -
Trre13g01268 1383 SUPERFAMILY RNase III domain-like 1132 1300 IPR036389 GO:0004525|GO:0006396
Trre13g01268 1383 CDD RIBOc 1148 1303 IPR000999 GO:0004525|GO:0006396
Trre13g01268 1383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 501 IPR027417 -
Trre13g01268 1383 SMART PAZ_2_a_3 799 942 IPR003100 GO:0005515
Trre13g01268 1383 Pfam PAZ domain 813 938 IPR003100 GO:0005515
Trre13g01268 1383 Gene3D Ribonuclease III domain 957 1107 IPR036389 GO:0004525|GO:0006396
Trre13g01268 1383 Gene3D Dicer dimerisation domain 551 638 IPR038248 -
Trre13g01268 1383 Gene3D Ribonuclease III domain 1128 1305 IPR036389 GO:0004525|GO:0006396
Trre13g01268 1383 Gene3D - 361 523 IPR027417 -
Trre13g01268 1383 SUPERFAMILY RNase III domain-like 964 1112 IPR036389 GO:0004525|GO:0006396
Trre13g01268 1383 SMART riboneu5 962 1117 IPR000999 GO:0004525|GO:0006396
Trre13g01268 1383 SMART riboneu5 1148 1303 IPR000999 GO:0004525|GO:0006396
Trre13g01268 1383 SMART ultradead3 22 227 IPR014001 -
Trre13g01268 1383 Pfam Helicase conserved C-terminal domain 367 486 IPR001650 -
Trre13g01268 1383 Gene3D paz domain 797 918 - -
Trre13g01268 1383 Gene3D - 26 286 IPR027417 -
Trre13g01268 1383 PANTHER DICER-RELATED 40 1377 - -
Trre13g01268 1383 Pfam Ribonuclease III domain 1169 1280 IPR000999 GO:0004525|GO:0006396
Trre13g01268 1383 Pfam Ribonuclease III domain 980 1095 IPR000999 GO:0004525|GO:0006396
Trre13g01268 1383 FunFam Endoribonuclease dicer-like 1 551 639 - -
Trre13g01268 1383 ProSiteProfiles Ribonuclease III family domain profile. 966 1097 IPR000999 GO:0004525|GO:0006396
Trre13g01268 1383 FunFam Endoribonuclease dicer-like 1 1128 1301 - -
Trre13g01268 1383 CDD DEXHc_dicer 26 223 - -
Trre13g01268 1383 ProSiteProfiles PAZ domain profile. 819 916 IPR003100 GO:0005515
Trre13g01268 1383 FunFam Endoribonuclease dicer-like protein 23 260 - -
Trre13g01268 1383 SUPERFAMILY PAZ domain 809 915 IPR036085 GO:0005515
Trre13g01268 1383 FunFam Endoribonuclease dicer-like 1 358 522 - -
Trre13g01268 1383 ProSitePatterns Ribonuclease III family signature. 1169 1177 IPR000999 GO:0004525|GO:0006396
Trre13g01268 1383 CDD RIBOc 965 1116 IPR000999 GO:0004525|GO:0006396
Trre13g01268 1383 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 556 638 IPR005034 GO:0016891
Trre13g01268 1383 ProSiteProfiles Ribonuclease III family domain profile. 1133 1280 IPR000999 GO:0004525|GO:0006396
Trre13g01268 1383 SMART helicmild6 397 488 IPR001650 -
Trre13g01268 1383 Pfam Dicer dimerisation domain 556 630 - -
Trre13g01268 1383 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 373 535 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01268 Trre-Chr13 10132085 10139126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01268 430 514 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 1.84e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01268 K11592 - gmx:100792448 1787.31