Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01258 ATGGAGGACAACACCGCCTTCAAAAATCGAAACTTTGATGACGACGAAGATGAACAAGTTCCTGATTCCTTTTGTTGTTGCGTTTGTCTGGATCTATTATACAAGCCGATTGTGCTATCTTGTGGTCACATTTGCTGTTTCTGGTGTGTCTATAAATCAATGAATTGTCTGCGCGAATCTCAGTGTCCAACATGTAGGCATCAATACTATCACTTCCCAACAGTCTGCCAAACGCTTCATTTTTTGCTTTTGAAGATCTATCCCGTTGCTTACAATAGAAGGATCAATCAAACTCTTGAGGAAGAGAAGAAATCAGGCTTCTACTCCCCTCAATTTGATCCCGACACATGTGAGTCACAAGCTAAATTTGGTCATTCATGTAGCCCTTCTTCCTCCTCTATGATAAATTCGGTTTCCACCTTCTGCAATGTCGGAAATTTTGAAAGTACGGAGCAACCACGGTCCACTGCCCATGAAGGAGAACCTGAATTTACTGGTACTCCTGTTGAAGAAAAAGCCTCGCCTCAAGGAGAACCTGAAATTACTCGGACTCCTGTTGAAGAAAAAGCATCGCCTCAAGATAATCTTGATATGCAACATAAATTATCAGTTGCAGATGTGATGTGTACAATGTGCAAGCAACTGCTTTTTCATCCCGTAGTTCTTAATTGTGGCCATGTATACTGTGAAACTTGTGTCTACAAGTTAGCTGATGAGATGCTTAGATGCCAAGTTTGTCAAAGTCCACATCCAAGAGGATTTCCAAAAGTGTGTTTGGAGTTTGATCACTTTTTAGAGGAACAATTTCCTGAAGAATATGCACGGCGAAGAGATGCTATTGAACTAAAGGACATCAAAGTCAAACTTGAGACCCCTCCTTCTAGTTCATTGGCTAATGGTAACAAAGGAGAACATAGCGAATGGTCGTCCGATCCTGACTCAAAAGTTCACGTTGGAGTTGGATGTGACTTTTGTGGGATGTTTCCAATCATTGGAGATAGATATAGGTGCAATGACTGCAAGGAAAAAATGGGTTTTGATCTTTGTGCCAATTGCTACGACACACGCTCCAAACTTCCAGGCCGATTTAATCAACAACACACTTCAGATCACAGTTTCAAGCTTGTAGAACCCAACGCTTTTCATAACATAATGTTGAGGCTGGTCACTGGACAGTTAGGACACAATTCTTTCGACATCGAGTCTTTAGGAAACCTAGAATTTACAGCCGAAGCCTCTGAGTTGTTTGAAGACGGCGAAGATAATCAGAATGACCCTGAAGCTACAAATTGA 1293 0.4145 MEDNTAFKNRNFDDDEDEQVPDSFCCCVCLDLLYKPIVLSCGHICCFWCVYKSMNCLRESQCPTCRHQYYHFPTVCQTLHFLLLKIYPVAYNRRINQTLEEEKKSGFYSPQFDPDTCESQAKFGHSCSPSSSSMINSVSTFCNVGNFESTEQPRSTAHEGEPEFTGTPVEEKASPQGEPEITRTPVEEKASPQDNLDMQHKLSVADVMCTMCKQLLFHPVVLNCGHVYCETCVYKLADEMLRCQVCQSPHPRGFPKVCLEFDHFLEEQFPEEYARRRDAIELKDIKVKLETPPSSSLANGNKGEHSEWSSDPDSKVHVGVGCDFCGMFPIIGDRYRCNDCKEKMGFDLCANCYDTRSKLPGRFNQQHTSDHSFKLVEPNAFHNIMLRLVTGQLGHNSFDIESLGNLEFTAEASELFEDGEDNQNDPEATN 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01258 430 ProSiteProfiles Zinc finger ZZ-type profile. 317 381 IPR000433 GO:0008270
Trre13g01258 430 SUPERFAMILY RING/U-box 203 250 - -
Trre13g01258 430 Pfam Zinc finger, ZZ type 317 357 IPR000433 GO:0008270
Trre13g01258 430 ProSiteProfiles Zinc finger RING-type profile. 26 66 IPR001841 -
Trre13g01258 430 ProSitePatterns Zinc finger RING-type signature. 224 233 IPR017907 -
Trre13g01258 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 111 IPR013083 -
Trre13g01258 430 ProSiteProfiles Zinc finger RING-type profile. 209 247 IPR001841 -
Trre13g01258 430 FunFam E3 ubiquitin-protein ligase PRT1 311 376 - -
Trre13g01258 430 SUPERFAMILY RING/U-box 13 71 - -
Trre13g01258 430 SUPERFAMILY RING/U-box 314 376 - -
Trre13g01258 430 SMART ring_2 209 246 IPR001841 -
Trre13g01258 430 SMART ring_2 26 65 IPR001841 -
Trre13g01258 430 FunFam E3 ubiquitin-protein ligase PRT1 196 291 - -
Trre13g01258 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 310 IPR013083 -
Trre13g01258 430 PANTHER UNCHARACTERIZED 16 394 - -
Trre13g01258 430 FunFam E3 ubiquitin-protein ligase PRT1 16 112 - -
Trre13g01258 430 Gene3D - 311 376 IPR043145 -
Trre13g01258 430 SMART zz_5 316 365 IPR000433 GO:0008270
Trre13g01258 430 MobiDBLite consensus disorder prediction 293 313 - -
Trre13g01258 430 MobiDBLite consensus disorder prediction 150 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01258 Trre-Chr13 10036951 10040837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01258 24 68 C3H Transcription Factor Family AT2G42030 37.778 9.65e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01258 - - tpra:123888067 856.284