Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01257 ATGAAGCCAACTTTGGGTCAAGCTCAAAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTCATGATTACTTTCTGAAAAGAAAGTTGCACACCACTGCGAAAACTTTTATGACAGAAGCAAAAGTTTCAACTGATCCAGTAGCAATTGATGCACCTGGAGGCTTTCTTTTCGAGTGGTGGTCTGTCTTTTGGGATATATTCATCTCGAGAACAAATGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACCCAGCAAACGAAGGCTAGAGAACAACTTCAAATGCAGCAAATGCAACTAATGCAGCAGCGCAATGTCCAGTTACAGCGAAGAGATCCTAATCATCCTGCGTTGGGTGGACTGGGCGGTTCCTTAAATGCCATGAACTCTGAAGGTATGATGGGGCAGCCACCAGCAAGTGTGTTGGCCATGAAAATGTATGAAGAGCGAATGAAACACCCTCATTCAATGGATTCAGAAGCTACTCCAAATCTTATCGATGCTAATAGGATGGCTCTTCTCAAATCAGCAACAAGTCATCAAGGTCAGCTGGTTCATGGTAATTCAGGGAATATGTCCAATGCATTGCAGCAACTGCAAGCACGGTCTACTCTAACCACTGACATCAAAGGAGATGTTAACATTGGTGCTGGTCCAAAGAATTTGCCTTTGGATACATCAGTTTATCGACAAGCAATTTTACAATCAAAATCTGGGTTAGGAAGTGCAGGATTAAATCAAGGAGTTACAAGTCTTCCGTTGAAGGGATGGCCTCTAACTGGAATTGATCAACTAAGACCTGGTTTGGGTGTACAAGTTCAGAAGCCTAATTTAACACCACAAAACCAATATCTTTTGGCATCACAACAACAACAGGTCTTGGCACAGGCTCAGGCACAAAACAACCTTGGAAATTCAAATTTTGGTGATATGGATCCGCGTAGACTTTCTGGTCTTCCTCGAGGTAGCTTAAATGCGAAGGATGGTCAATCTAACAGGAACGATGGAACTATTTCCTCCCAAATGCAAGCAGGTTCACCTAAGATGAAGATGACCCAGTCACAACAATCGTTATCTCAGCAGCAAGAGCAATTGCAGCAGAATCAACTTCAGCAGAGTAACAGAAAACGAAAGCAAGCAACTTCCTCTGGAGCTGCCAATAGCACTGGTACTGGAAACACAGCTGGTCCTTCACCTAATTCACCGCCATCAACACACACACCTGGTGATGGATTAAATACAGCTAGCAGCATGCAAAATGTTAACAGTGTGCCAAAGAGCATGATGATGTATGGTACTGAGGCAACAGGAGGCCTTGCATCATCTTCAAATTTACTTGACGATATGGAACGGTTTGGAGATGTTGGTGCTTTAGATGATAATGTGGAATCCTTTCTATCAAACGATGCAGGAGATGGTGCCAATCTCTATGGAACAATAAAACAAAGTCCGGCTGAGCAACCAAAAGAGCCTCCGAGAACTTTCACCTTTGCTGAATTTAGTTGCATAAGAACAAGGAGCAATGTTACTTCCTGTCACTTCTCTTCAGATGGAAAGTTGCTTGCCAGTGCTGGGGAGGACAAGAAGGTTGTCCTGTGGAATATGGACACTTTACGGACAGAGACCACTCCTGAAGACCACACATTAGTTATTACAGATGTTCGTTTTAGACCAAATTCATCTCAGTTGGCGACAGCTTCGTGTGACAAATCTGTGCGGTTATGGGACGCAGCCAATCCAACCTATTGTGTTCAACAATATACTGGCCACACTTCAGCTATTATGTCCCTTGATTTCCACCCCAAGAAGACTGATATTTTCTGCTTTTGTGATAGCGAAAATGAGATTCGGTATTATCACATTGCTTCATCCTCTTGTACCCGTGTATCTAAGGGAGGTAGTGCTAAGGTGAGGTTTCAGCCTAGATCGGGACAGTTTCTTGCAGCAGCTTCTGATAAAGTAGTGTCAATTTTTGATGTCGAAACTGACAGACAAATTTACTCACTCCAGGGTCATGCTGAACCGGTGAACTATATTTGCTGGGATGGTACTGGAGAGTTCTTGGCATCTGTTAGTCCAAATTTGGTGAAGGTATGGAATTTGACCTCAGGAGAATGCGTTCAGGAGCTCACCTCCCCTGGAAACCAGTTTTATTCCAGTGTTTTTCATCCAAGCTATTCAACTTTATTAGTTGTCGGAGGGTTTTCGTCCATAGAGTTGTGGAACATGGCTGAGAACAAAAGCATGACAATTCCTGGACATGAGAATGTGATTTCTGCATTGGCTGAGGCTTCTGTCACTGGAATGGTTGCCTCTGCGAGTCGAGATAACTCTGTAAAGTTGTGGAAATAA 2361 0.432 MKPTLGQAQSNWEADKMLDVYIHDYFLKRKLHTTAKTFMTEAKVSTDPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSEAAAAYIETQQTKAREQLQMQQMQLMQQRNVQLQRRDPNHPALGGLGGSLNAMNSEGMMGQPPASVLAMKMYEERMKHPHSMDSEATPNLIDANRMALLKSATSHQGQLVHGNSGNMSNALQQLQARSTLTTDIKGDVNIGAGPKNLPLDTSVYRQAILQSKSGLGSAGLNQGVTSLPLKGWPLTGIDQLRPGLGVQVQKPNLTPQNQYLLASQQQQVLAQAQAQNNLGNSNFGDMDPRRLSGLPRGSLNAKDGQSNRNDGTISSQMQAGSPKMKMTQSQQSLSQQQEQLQQNQLQQSNRKRKQATSSGAANSTGTGNTAGPSPNSPPSTHTPGDGLNTASSMQNVNSVPKSMMMYGTEATGGLASSSNLLDDMERFGDVGALDDNVESFLSNDAGDGANLYGTIKQSPAEQPKEPPRTFTFAEFSCIRTRSNVTSCHFSSDGKLLASAGEDKKVVLWNMDTLRTETTPEDHTLVITDVRFRPNSSQLATASCDKSVRLWDAANPTYCVQQYTGHTSAIMSLDFHPKKTDIFCFCDSENEIRYYHIASSSCTRVSKGGSAKVRFQPRSGQFLAAASDKVVSIFDVETDRQIYSLQGHAEPVNYICWDGTGEFLASVSPNLVKVWNLTSGECVQELTSPGNQFYSSVFHPSYSTLLVVGGFSSIELWNMAENKSMTIPGHENVISALAEASVTGMVASASRDNSVKLWK 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01257 786 Gene3D - 481 638 IPR015943 GO:0005515
Trre13g01257 786 PRINTS G protein beta WD-40 repeat signature 524 538 IPR020472 -
Trre13g01257 786 PRINTS G protein beta WD-40 repeat signature 566 580 IPR020472 -
Trre13g01257 786 PRINTS G protein beta WD-40 repeat signature 773 786 IPR020472 -
Trre13g01257 786 SUPERFAMILY WD40 repeat-like 507 786 IPR036322 GO:0005515
Trre13g01257 786 Pfam WD domain, G-beta repeat 510 537 IPR001680 GO:0005515
Trre13g01257 786 Pfam WD domain, G-beta repeat 548 579 IPR001680 GO:0005515
Trre13g01257 786 Pfam WD domain, G-beta repeat 752 786 IPR001680 GO:0005515
Trre13g01257 786 Pfam WD domain, G-beta repeat 668 703 IPR001680 GO:0005515
Trre13g01257 786 SMART WD40_4 540 579 IPR001680 GO:0005515
Trre13g01257 786 SMART WD40_4 747 786 IPR001680 GO:0005515
Trre13g01257 786 SMART WD40_4 583 623 IPR001680 GO:0005515
Trre13g01257 786 SMART WD40_4 706 745 IPR001680 GO:0005515
Trre13g01257 786 SMART WD40_4 665 703 IPR001680 GO:0005515
Trre13g01257 786 SMART WD40_4 502 537 IPR001680 GO:0005515
Trre13g01257 786 SMART WD40_4 626 662 IPR001680 GO:0005515
Trre13g01257 786 SMART Lish 14 46 IPR006594 GO:0005515
Trre13g01257 786 Pfam LisH 16 42 IPR006594 GO:0005515
Trre13g01257 786 Coils Coil 354 374 - -
Trre13g01257 786 CDD WD40 509 786 - -
Trre13g01257 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 547 579 - -
Trre13g01257 786 MobiDBLite consensus disorder prediction 307 421 - -
Trre13g01257 786 ProSitePatterns Trp-Asp (WD) repeats signature. 524 538 IPR019775 -
Trre13g01257 786 MobiDBLite consensus disorder prediction 327 421 - -
Trre13g01257 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 672 712 IPR001680 GO:0005515
Trre13g01257 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 579 IPR001680 GO:0005515
Trre13g01257 786 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 12 786 IPR044716 GO:0003714
Trre13g01257 786 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Trre13g01257 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 754 786 - -
Trre13g01257 786 Gene3D - 639 786 IPR015943 GO:0005515
Trre13g01257 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 512 546 IPR001680 GO:0005515
Trre13g01257 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 754 786 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01257 Trre-Chr13 10023920 10030645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01257 585 785 Miscellaneous Gene Families AT5G08390 20.874 2.62e-09 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre13g01257 WD40 0.071 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01257 - - cave:132165278 1184.86