Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01249 ATGAGTTGCTTTTCATGTTTCTCATCCCAAGAAAAGAAAGTACCAAAGAGGCCTAACAATAATAATGGAAAGAAGATACAAGATCATCCTACACAAATTTCTCCTAAGAAAGCATCTCAACCTCAGCCAGAGAATCATTTTCAAAAGGCAAGGGCAAGCAGCCCACAAAGAGAACCTAAAATAAATAAAGAGACCAAAAAAGATAGTGGTAGCAACATTGCTGCACAAACATTTACCTTTAGAGAATTGGCTTCTATCACAAGAAACTTTAGGCAAGAAAATTTAATAGGTGAAGGTGGATTTGGAAGAGTTTATAAAGGAAGACTTGAAAAAACCAACCAGGAAGTAGCTGTGAAGCAACTTGACAGGAATGGATTGCAAGGGAACAGAGAGTTTCTTGTTGAAGTGTTGATGTTGAGCCTTTTGCATCATCAAAATCTAGTGAATCTAATTGGATATTGTGCTGATGGAGATCAAAGACTATTGGTATATGAGTATATGTCATTAGGATCCCTTGAGGATCACTTATTTGATCTTGAACCACACCAAAAGCCATTAGATTGGTTAACAAGAATGAAAGTAGCATTGGAAGCTGCAAAAGGATTAGAATATTTGCATGATAAGGCCAATCCACCTGTCATATACCGTGACTTAAAATCATCCAACATCTTATTGGACAATGATTTCAATGCAAAACTCTCTGATTTTGGATTAGCAAAGCTAGGACCTACAGGTGACAAGTCACATGTGTCTTCAAGAGTAATGGGGACTTATGGATACTGTGCACCTGAATATCAAAGAACAGGTCAACTCACTGTGAAATCAGATATATACAGTTTTGGTGTTGTTTTGCTTGAATTGATTACTGGAAGAAGAACTATTGATAACACAAGACATTCAAGAGAGCAAAATCTTGTTTCTTGGGCATATCCAGTATTCAGGGATCCACATAGATATCCAGAATTAGCAGATCCAAAACTTGAAGGAAACTTTCCAATGAGATCATTACATCAAGCAGTGGCAGTAGCAGCAATGTGTCTAAATGAAGAACCATCAGTGAGACCATTGATAAGTGATGTTGTAACAGCTCTTAGTTTTCTTGGAGTAACACCAATGAATCAAGATCCACAAATTTTGTCACCAATTGATATGCCGTCACCAACACCAGAAAATGAAGCAAAAAGTGCAACCTTGAGTCTTCTTGACGATGATAGTGCCGTCGTACGCCAAAGAGCTGTCGATGAAGCCATGGAATGGGGTTCAAATTCTAGGACTAAACCAAGTTATGACAGTTCTTCAACTTTGTAA 1308 0.3769 MSCFSCFSSQEKKVPKRPNNNNGKKIQDHPTQISPKKASQPQPENHFQKARASSPQREPKINKETKKDSGSNIAAQTFTFRELASITRNFRQENLIGEGGFGRVYKGRLEKTNQEVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMSLGSLEDHLFDLEPHQKPLDWLTRMKVALEAAKGLEYLHDKANPPVIYRDLKSSNILLDNDFNAKLSDFGLAKLGPTGDKSHVSSRVMGTYGYCAPEYQRTGQLTVKSDIYSFGVVLLELITGRRTIDNTRHSREQNLVSWAYPVFRDPHRYPELADPKLEGNFPMRSLHQAVAVAAMCLNEEPSVRPLISDVVTALSFLGVTPMNQDPQILSPIDMPSPTPENEAKSATLSLLDDDSAVVRQRAVDEAMEWGSNSRTKPSYDSSSTL 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01249 435 Gene3D Transferase(Phosphotransferase) domain 1 167 374 - -
Trre13g01249 435 Gene3D Phosphorylase Kinase; domain 1 60 166 - -
Trre13g01249 435 FunFam Serine/threonine-protein kinase PBS1 167 380 - -
Trre13g01249 435 MobiDBLite consensus disorder prediction 51 67 - -
Trre13g01249 435 ProSiteProfiles Protein kinase domain profile. 90 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01249 435 MobiDBLite consensus disorder prediction 421 435 - -
Trre13g01249 435 SMART serkin_6 90 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01249 435 MobiDBLite consensus disorder prediction 1 72 - -
Trre13g01249 435 SUPERFAMILY Protein kinase-like (PK-like) 76 389 IPR011009 -
Trre13g01249 435 CDD STKc_IRAK 96 364 - -
Trre13g01249 435 FunFam Serine/threonine-protein kinase PBS1 62 166 - -
Trre13g01249 435 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Trre13g01249 435 MobiDBLite consensus disorder prediction 415 435 - -
Trre13g01249 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Trre13g01249 435 Pfam Protein kinase domain 91 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01249 435 MobiDBLite consensus disorder prediction 1 50 - -
Trre13g01249 435 PANTHER OS07G0668900 PROTEIN 3 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01249 Trre-Chr13 9900158 9903030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01249 1 433 Glycoside Hydrolase AT3G07070 65.589 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trre13g01249 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01249 - - psat:127127708 725.317