Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01237 ATGGCTCGAGTGAGGACAACCCCACGATCACGATTAGTTTTACCGAAACTAACGGTACGAATGAATCCGGCAAAGGAAATCCACTATCGCGGTGTTCGAAAGCGACGATGGGGCAAATATGCTGCAGAAATTAGAGACCCATTCAACAAGATTCGCTGTTGGTTAGGCACTTTTGAAACTGCCATAGAAGCTGCCCGTGCCTACGACCAAAAAGCAATTGAATTCCGTGGGGAAAATGCTATAACTAATTTTCCAATCTCTGAATATATCATTGATGATGCTCAAATTCCAACTGCTACTCCACCTGCTCAGATTCATCAATCTACTGCTCCTCTGCTTAACGACTGTGAGACTAGTGAATGTCAATCCTCATGTTGTTAA 381 0.4357 MARVRTTPRSRLVLPKLTVRMNPAKEIHYRGVRKRRWGKYAAEIRDPFNKIRCWLGTFETAIEAARAYDQKAIEFRGENAITNFPISEYIIDDAQIPTATPPAQIHQSTAPLLNDCETSECQSSCC 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01237 126 Gene3D AP2/ERF domain 27 87 IPR036955 GO:0003700|GO:0006355
Trre13g01237 126 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Trre13g01237 126 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Trre13g01237 126 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Trre13g01237 126 CDD AP2 28 87 IPR001471 GO:0003700|GO:0006355
Trre13g01237 126 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 103 - -
Trre13g01237 126 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Trre13g01237 126 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Trre13g01237 126 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Trre13g01237 126 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01237 Trre-Chr13 9816142 9816522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01237 22 99 AP2-EREBP Transcription Factor Family AT3G15210 64.103 2.66e-28 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre13g01237 AP2 1.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01237 K09286 - apan:127253393 111.309