Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01227 ATGTCTCTTTCAAAAAACAACACTCAGATGAAGGAAGGTGGAGCAACAACAACAGCAGCACCTTCATCCTCCTCATCTTCATGGAGTAGGCTCCCTCCTATGCCTCCACACAGATTTGAAGATAGCGATGAAGATCTATTCGAAGTTCCGGATGTTGAAGGTACACAAAGTCAAAGTGTCCATTCGGAAGGAACAAATCAAAATAGTAATCATAATCAAAACAATGCAACAGATCCTCAACTTCAACCTGGCTTCCCTGGAAAGCGCCGCCGTGGAAGAAACCCCGTAGATAAAGAATATAGACGACTCAAAAGGTTGCTAAGGAACAGGGTCTCTGCCCAACAAGCTCGTGAAAGAAAAAAAGTGTACGTGAATGACTTAGAATCAAGAGCTAAAGAGATGGAAGATAAGAACTCCAATTTAGAAGAGCGCATCTCAACTTTGATCAATGAAAACACCATGCTCCGAAAGGTTCTTATGAACACTAGACCAAAAGTTGATGAGAGCAATGAACCTTAG 519 0.42 MSLSKNNTQMKEGGATTTAAPSSSSSSWSRLPPMPPHRFEDSDEDLFEVPDVEGTQSQSVHSEGTNQNSNHNQNNATDPQLQPGFPGKRRRGRNPVDKEYRRLKRLLRNRVSAQQARERKKVYVNDLESRAKEMEDKNSNLEERISTLINENTMLRKVLMNTRPKVDESNEP 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01227 172 MobiDBLite consensus disorder prediction 1 101 - -
Trre13g01227 172 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 104 119 IPR004827 GO:0003700|GO:0006355
Trre13g01227 172 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 99 162 IPR004827 GO:0003700|GO:0006355
Trre13g01227 172 SMART brlzneu 97 161 IPR004827 GO:0003700|GO:0006355
Trre13g01227 172 Pfam bZIP transcription factor 98 157 IPR004827 GO:0003700|GO:0006355
Trre13g01227 172 MobiDBLite consensus disorder prediction 1 31 - -
Trre13g01227 172 MobiDBLite consensus disorder prediction 52 81 - -
Trre13g01227 172 Coils Coil 117 158 - -
Trre13g01227 172 FunFam Transcription factor HY5 120 161 - -
Trre13g01227 172 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 14 169 IPR044280 GO:0000981|GO:0045944
Trre13g01227 172 CDD bZIP_HY5-like 111 152 - -
Trre13g01227 172 Gene3D Single helix bin 120 161 - -
Trre13g01227 172 SUPERFAMILY Leucine zipper domain 100 160 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01227 Trre-Chr13 9698219 9700233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01227 74 168 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 73.958 3.06e-42 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre13g01227 bZIP_1 1.3e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01227 K16241 - gmx:100783826 213.772