Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01226 ATGGATTTAAGAGATTTATGGATTGTCTACTTTATGTTTTGTAGCTTCTTGGATGTTGCTTTTTGTGGACAAGATGGTTTCTTGAGTCTATCATGTGGAGGAAAAACCAGCTTCAATGATTCATCTAACATTTCATGGTTCCAAGACACTCCTTACATAACAACTGGAAAGACAACCACAATCAATTACAATGATGGTTCCTTGTCAACAAACATCTCGGCTCGGTTCTTCCCTTATTCCAGACGTCATGCATGCTATCGGATACCGGTGAACAATGCAACTAGTTTGATTCTTGTGAGAGCCAAATTTGTATACAAAAACTATGATGGACATAGAAAACCACCTACTTTCTATGTTTCTCTTGGAACAGCTATTGCTGCTAAGATAAATTTAGCTAAAAATGATCCATTGATAGAAGAGTTTCTTTGGGAAGTTAACAAGGATACACTTGTGTTTTGTTTGAATTCAATTCCAAATGGTGGTTCTCCTATAATTTCTTTACTTGAAATTAGACCTCTTCCTAAAGGATCCTACATAAAGGGAAAAGAAGATTTTCCAAATAAGTTACTTAGGATGAGTTATAGAATTGATTGTGGACACATCAATGAGTCTATAAGGTACCCTATGGATCCATATGATAGAATATGGAATGGTGATAGAAGTTTCATACCTTTTCATGCTACAACTGGATTTAAGATTCAGAATAGCTTCAACCAATCCAATATTGTGGAGAAACCACCGGCTTCTGTTCTTCAAACTGGAAGAGTCTTGGCCCGACGAAACATGCTGGCATATAACCTCCCTCTTGAGGGATTAGGGGACTACTACATTATCCTCTATTTTGCTGGAATTCTTCCTGTTTTCCCCTCATTTGATGTATTCATAAATGAAGATCTTGTAAAGTCAAACTATACGATAAAAAAGTCAGAAACCAGTGTTTTATATGTCACACGAAAGGGTATAAACACATTGAATATAACACTAAGAAGTATCAACTTCTACCCTCAGATCAATGCATTTGAAGTATATAATATGGTTGATATTCCGCCAGAAGCCTCCTCGACCACAGTTTCAGCAATGCAGGTTATTCAGCAATCCACCGGATTGGATCTCGGATGGCAAGATGATCCATGCTCCCCTTTTCCATGGAATCACATACTTTGTGAAGGAAACTTAGTTACATCATTGGCTCTGTCAGACATAAATTTGAGATCAATTAGTCCTACATTTGGTGACTTGCTAGACCTTAAAACATTGGATTTGCACAACACATCACTTGCTGGTGAAATCCAGAATTTGGGTAGCTTGCAAAGTCTTGCAAAACTGAACCTTAGTTTCAATCAGCTGACATCCTTTGGTGAAGAGCTGGAAAACTTGATTAACCTTCAAATTTTAGACTTGGAAAATAATAATCTCCAAGGAGTAGTGCCTGATAGCTTGGGAGAGATAGAAAACCTCCATTTACTGAATCTAGAAAACAACAATCTACAGGGTCCACTTCCACAGTCTTTGAACAAAGACACTTTAGAGATCAGAACATCTGGAAATTTGTGCCTTACTTTTTCTACAAACGGATGCAACGACACATCATCCAATCCTCCAATTGTGGCACCACAACTGATTACATTTCCCAAAAGGAAGCACCATGGACAAAATCTAGCAGTAATACTAGGCACAGTTGGCGGATCTACACTTGCCATTTTCCTGATATGTCTATCAGTATTTATATACAATGCTAAAAGAAGATATCAAGCCTCACACAGAACTAGGGAAGAAACTGATATGAGGAACTGGGGCGCAGAAAAAGTTTTTACCTACAAAGAAATAAAAGTAGCTACTAGCAATTTTAAGGATATCATAGGAAGAGGAGGTTTTGGATCTGTTTACCTTGGAAAGCTTTCAAATGGAAAATCAGTTGCTGTCAAAGTTCGGTTCGATAAATCCCAACTTGGGGTTGATTCTTTTATCAATGAGATTCATCTCTTGTCGAAAATCCGCCATCAAAATCTTGTGACTTTGGAAGGATTTTGTCATGAATCAAAGCATCAGATATTGGTTTATGAATACTTACCTGGTGGATCCCTGGCTGATCACCTCTATGGTACAAACAGTCTTAAAGCTCCCTTAAGCTGGATTCGAAGGTTGAAAATTGCTGTCGATGCAGCAAAAGGATTGGATTATTTGCATAATGGAAGTGAACCGAGAATCATACACCGCGATGTCAAGTGTAGTAACATTCTCTTGGACATGGATTTGAATGCCAAGGTTTGTGACTTTGGCCTGTCTAAGCAGGTAACCAAAGCAGATGCAACTCATGTCACAACTGTTGTCAAGGGAACTGCTGGCTATCTAGATCCAGAGTATTACTCTACCCAACAACTTACTGAGAAAAGTGATGTATATAGCTTTGGAGTTGTTCTTTTGGAACTCATTTGTGGAAGAGAGCCATTGATTCATTTTGGGACTCCTGATTCATTCAATTTGGTTCTATGGGCCAAACCCTATTTACAGGCAGGTGCATTTGAAGTTGTGGATGAAAGCATACAAGGAACTTTTGATCTAGGGAGCATGAAGAAGGCGGCGTTCATTGCTGTGAAGTCGGTGGAAAGAGATGCATCACAGAGGCCACCTATTTCTGAAGTATTAGCAGAACTAAAGGAAGCTTATGATATTCAGCTCGGGTTTCTTGAGTCATGTCAAAATGATAACTGA 2712 0.3857 MDLRDLWIVYFMFCSFLDVAFCGQDGFLSLSCGGKTSFNDSSNISWFQDTPYITTGKTTTINYNDGSLSTNISARFFPYSRRHACYRIPVNNATSLILVRAKFVYKNYDGHRKPPTFYVSLGTAIAAKINLAKNDPLIEEFLWEVNKDTLVFCLNSIPNGGSPIISLLEIRPLPKGSYIKGKEDFPNKLLRMSYRIDCGHINESIRYPMDPYDRIWNGDRSFIPFHATTGFKIQNSFNQSNIVEKPPASVLQTGRVLARRNMLAYNLPLEGLGDYYIILYFAGILPVFPSFDVFINEDLVKSNYTIKKSETSVLYVTRKGINTLNITLRSINFYPQINAFEVYNMVDIPPEASSTTVSAMQVIQQSTGLDLGWQDDPCSPFPWNHILCEGNLVTSLALSDINLRSISPTFGDLLDLKTLDLHNTSLAGEIQNLGSLQSLAKLNLSFNQLTSFGEELENLINLQILDLENNNLQGVVPDSLGEIENLHLLNLENNNLQGPLPQSLNKDTLEIRTSGNLCLTFSTNGCNDTSSNPPIVAPQLITFPKRKHHGQNLAVILGTVGGSTLAIFLICLSVFIYNAKRRYQASHRTREETDMRNWGAEKVFTYKEIKVATSNFKDIIGRGGFGSVYLGKLSNGKSVAVKVRFDKSQLGVDSFINEIHLLSKIRHQNLVTLEGFCHESKHQILVYEYLPGGSLADHLYGTNSLKAPLSWIRRLKIAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMDLNAKVCDFGLSKQVTKADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLIHFGTPDSFNLVLWAKPYLQAGAFEVVDESIQGTFDLGSMKKAAFIAVKSVERDASQRPPISEVLAELKEAYDIQLGFLESCQNDN 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01226 903 Gene3D Phosphorylase Kinase; domain 1 577 689 - -
Trre13g01226 903 Pfam Leucine rich repeat 438 496 IPR001611 GO:0005515
Trre13g01226 903 Pfam Malectin-like domain 30 344 IPR024788 -
Trre13g01226 903 FunFam serine/threonine-protein kinase PBS1-like 582 689 - -
Trre13g01226 903 Gene3D Ribonuclease Inhibitor 356 528 IPR032675 -
Trre13g01226 903 ProSiteProfiles Leucine-rich repeat profile. 438 460 IPR001611 GO:0005515
Trre13g01226 903 ProSitePatterns Serine/Threonine protein kinases active-site signature. 736 748 IPR008271 GO:0004672|GO:0006468
Trre13g01226 903 Gene3D - 190 346 - -
Trre13g01226 903 SMART serkin_6 614 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01226 903 PANTHER OS07G0107800 PROTEIN-RELATED 455 889 - -
Trre13g01226 903 CDD STKc_IRAK 620 887 - -
Trre13g01226 903 Gene3D Transferase(Phosphotransferase) domain 1 690 895 - -
Trre13g01226 903 ProSiteProfiles Protein kinase domain profile. 614 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01226 903 SMART LRR_typ_2 436 458 IPR003591 -
Trre13g01226 903 SMART LRR_typ_2 459 482 IPR003591 -
Trre13g01226 903 SUPERFAMILY L domain-like 358 506 - -
Trre13g01226 903 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 690 894 - -
Trre13g01226 903 Pfam Protein tyrosine and serine/threonine kinase 616 832 IPR001245 GO:0004672|GO:0006468
Trre13g01226 903 ProSitePatterns Protein kinases ATP-binding region signature. 620 642 IPR017441 GO:0005524
Trre13g01226 903 SUPERFAMILY Protein kinase-like (PK-like) 593 885 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01226 Trre-Chr13 9686732 9692544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01226 6 898 Receptor kinase-like Gene Family AT5G48740 62.192 0.0 1092
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre13g01226 Malectin_like 2.5e-51 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01226 - - aprc:113850446 1422.14