Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01224 ATGGAGGAAGAAAATAATGAAACGAAATCATTTAAGGATCTCGGCTTACCTGAGGAATTGGTGGAAGCTTGTGAAAGATTGGGTTGGAAGACTCCGCTAAAGATCCAAATAGAAGCAATTCCCCTTGCACTACAAGGAAAAGATGTGATTGGACTTGCCCAAACGGGTTCTGGTAAGACTGGAGCTTTTGCTCTTCCTATATTGCATGCACTCTTAGAAGCACCACGCCCAAACCATTTCTTTGCTTGTGTGTTGTCTCCCACAAGGGAACTTGCCATTCAAATTTCTGAACAGTTTGAAGCTCTAGGTTCTGGAATTGGTGTCAAGTGTGCTGTGCTTGTTGGAGGGATTGACATGGTACAACAATCCATCAAGATAGCAAAGCATCCTCATATTATTGTTGGGACTCCTGGACGTGTCTTGGATCACCTAAAAAACACCAAAGGATTTTCTCTCGGTAAACTAAAATACTTGGTCTTAGATGAGGCAGACAGACTGTTGAATGAGGATTTTGAGGAATCACTTAATGAGATTTTAGGAATGATCCCTCGTGAGCGAAGGACTTTCCTTTTTTCTGCTACGATGACGAAGAAGGTCGAGAAGCTCCAAAGGGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCATCAACGAAGTATTCTACCGTGGATACACTAAAGCAACAATATCGCTTCTTGCCAGCAAAACATAAGGATTGTTACCTCGTATACATTCTCACTGAAATGGTTGGAAGTACATCAATGGTGTTCACTCGGACATGTGATGCAACGCGGCTTCTTGCTTTGATTCTTAGGAATCTCGGTTTGAAAGCCATCCCAATTAATGGTCATATGAGTCAGCCAAAGCGACTTGGAGCCTTGAATAAGTTCAAGTCTGGGGATTGCAATATTCTCCTTTGCACCGATGTAGCTAGTAGGGGACTGGATATTCCAGCAGTAGATATGGTGATTAACTATGACATTCCAACAAACTCCAAAGATTATATACATCGCGTGGGAAGGACTGCTCGGGCAGGGCGTTCCGGGGTAGCCATTTCCCTTGTAAACCAATATGAGCTAGAGTGGTACATTCAGATAGAGAAGCTTATAGGCAAGAAGCTACCAGAGTATCCTGCACAAGAAGAGGAAGTTTTGCTTTTGGAAGAGCGTGTTAGTGAGGCCAAAAGATTAGCTGCAACGAAAATGAAGGAAAGCGGAGGGAAGAAGAAGCGGAGGGGCGAAGGTGATTCAGGAGAGGATGAGGATATTGACAAATACTTTGGCCTGAAAGACAGAAAATCGTCTAAGAAGTTTAGAAGAAAATGA 1323 0.4293 MEEENNETKSFKDLGLPEELVEACERLGWKTPLKIQIEAIPLALQGKDVIGLAQTGSGKTGAFALPILHALLEAPRPNHFFACVLSPTRELAIQISEQFEALGSGIGVKCAVLVGGIDMVQQSIKIAKHPHIIVGTPGRVLDHLKNTKGFSLGKLKYLVLDEADRLLNEDFEESLNEILGMIPRERRTFLFSATMTKKVEKLQRVCLRNPVKIEASTKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMVGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEEEVLLLEERVSEAKRLAATKMKESGGKKKRRGEGDSGEDEDIDKYFGLKDRKSSKKFRRK 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01224 440 Pfam Helicase conserved C-terminal domain 239 345 IPR001650 -
Trre13g01224 440 Gene3D - 219 391 IPR027417 -
Trre13g01224 440 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Trre13g01224 440 CDD SF2_C_DEAD 225 354 - -
Trre13g01224 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 366 IPR027417 -
Trre13g01224 440 CDD DEADc_DDX47 10 214 IPR044765 GO:0005524
Trre13g01224 440 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 6 396 - -
Trre13g01224 440 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 159 167 IPR000629 -
Trre13g01224 440 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 213 IPR014001 -
Trre13g01224 440 SMART helicmild6 264 345 IPR001650 -
Trre13g01224 440 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 240 384 IPR001650 -
Trre13g01224 440 SMART ultradead3 28 228 IPR014001 -
Trre13g01224 440 Pfam DEAD/DEAH box helicase 34 202 IPR011545 GO:0003676|GO:0005524
Trre13g01224 440 Gene3D - 1 218 IPR027417 -
Trre13g01224 440 MobiDBLite consensus disorder prediction 397 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01224 Trre-Chr13 9666766 9672276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01224 10 377 Eukaryotic Initiation Factors Gene Family AT3G19760 31.989 2.70e-63 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01224 K14777 - gmx:100775796 733.791