Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01218 ATGCTGGAACCCTTAATAGCACCAAAAAATCCCAAATCAACCCAAAATCAACCAAATCGCCATAAAAAACATCTATTTAACAACTCTAAACACAAATCAGGCCTCAGAACACGAATAATTTGTTCAGTCACCCATTCTCAAGAGTTTTTCTTTCTTCTTCTTTTGTTCTGTTCTGTTTCGTTTTTTCTTCTTCTTTTGTTCTGTTCCATTGAATTTCTTCGTCTGTTCTATTCATTTCAGGTGTTGAAGTTAGGGTTACCCTCATGCACACTTAAATCATCATCTGAAGCTGTTCTTGAAGGTGTGGCTGCTGGATTCAAGGGAGCTCAAGAAAATGCAAGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCCCCCAAGCATTGGATGCTTGACAAATTGGGTGGTGCTTTTATGATGGGCGTTTCAATGTTGAGCTTGAAAATGGAATGA 453 0.3863 MLEPLIAPKNPKSTQNQPNRHKKHLFNNSKHKSGLRTRIICSVTHSQEFFFLLLLFCSVSFFLLLLFCSIEFLRLFYSFQVLKLGLPSCTLKSSSEAVLEGVAAGFKGAQENARGLKKHLKRLNAPKHWMLDKLGGAFMMGVSMLSLKME 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01218 150 ProSitePatterns Ribosomal protein S4e signature. 119 133 IPR018199 -
Trre13g01218 150 MobiDBLite consensus disorder prediction 1 26 - -
Trre13g01218 150 Pfam RS4NT (NUC023) domain 114 139 IPR013843 -
Trre13g01218 150 Gene3D - 112 150 IPR036986 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01218 Trre-Chr13 9626131 9627103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01218 113 138 Cytoplasmic Ribosomal Protein Gene Family AT2G17360 100.000 2.93e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01218 K02987 - sind:105176262 59.3066