Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01199 ATGGTTTTCAGCAACTATGCATATTTGTTGTCTGTTATATTCATTTTGTTTTGCTATTTGTTACGTGTTAGTATCGGTATAGACACGATCACATCATCTCAATTTATCAAGGACCCCGAAAATCTAGTCTCCAAAGATGGCAACTTCACCTTGGGATTCTTTAGTCCTAAAAATTCTACAAATCGATACGTTGGAATTTGGTGGAAGTCTCAATCTACAATCATATGGGTGGCAAACAGAAACCAGCCGCTGAATGATTCTAATGGGATTGTCGCAATATATGGAGATGGCAATCTTGTCGTATTAAATGGACATAAACAAGTTATTTGGTCATCAAATGTTTCGAACATAGCATCGAATACAAATTCACAGTTTTCGGAGTTCGGTAACCTTGTCCTTTTGGAGAGCATAACAAGAAACATTTTATGGCAGAGTATTGAGCAGCCGTCGGATACATTACTTCCTAGCATGAAACTATCAATCAACAAAAGAACAGGTAAGAGTGTGAAACTCAGATCATGGAAAAGCCCTTCTGATCCATCGGTTGGAAACTTCTCGTCTAGTACTATTGAACGCCAACATATACTTGAAGTGATCGTTTGGAATGAAACTCGAATATGCTGGCGCAGCGGTCCTTGGAACGGTGGGGTCTTCACTGGGATACAGGCAATGACAATGGCATATTTTTTTGGTTTTCAAGCCGGAGATGATGGCGAAGGGAATACTGTTATATATTACACAATACAAAATGATGACGATTTTTTTATCTATCACTTGAATTCAAAAGGGATATTAGAAGAAACACGGTGGGATGATACGAAGAAAGAAGTTCGTGTTACATGGACAAGCCGAGACTCAGAATGTGATGTTTATGGCATATGCGGGACATTTGCAACGTGTAATTCATTGAGCTCACCAATATGCAGCTGTTTGAGAGGATTTGAACCGAGAAACATAGGTGAATGGAATAGAAAAAACTGGACCGGTGGATGCATTAGGAGGACACCGTTGCAGTGTGAAAGAGTCGACAATAAAACCGCAAGTAGAAAGGAAGACGGATTTTTGAAACTGCAGATTATTAAAGTTCCAGATTTTGCTGAAGGTTTAACTGTTACATCAGACATATGCAGAAACTTATGCTTGAAGAATTGCTCTTGCCTTGCATATTCTCATAATGATGGGATTGGATGTATGTCTTGGACTGAAAATCTACTTGACATACAACAACTGCAAATCGGAGGACTTGATCTGTATGTTCGTGTCGCCTACACAGAACTTGATAGAGGGAGAAACATGACGATCGTCATTATAAGTACAGTGATAATCGGAATTCTCATAATTGTCATTTGTGCATATATCATATGGAGAAGAAGATCAAACCATCCAGCTAAACTATGGCACTTTGTTAAATCAGCAAGGAAAAAGAATAATAAATCTTTCCAACTTTTTAATAAAGGTGGATCACAAGAACATTATACTACTGACAATGAAATCGGAGAATCGCCTCAAGTTAAACTACAAGAGTTATTAATATTCGATTTTGAAAAGCTTGCAACTGCCACAAATAACTTCCATTTGTCCAACAAACTTGGACACGGCGGTTTTGGTACAGTATACAAGGGGAAACTGCAAGATGGTCAGGAAATAGCGGTTAAAAGACTTTCTCGAGCATCTGGACAAGGGCTAGAAGAATTCATGAATGAAGTAGTGGTGATTTGTAAGCTTCAACACCGCAATCTTGTAAGACTTCTTGGCTGCTGTATCGAAGGCGATGAGAAGATGTTGATGTATGAGTACATGCCAAACAAAAGTTTGGATGCATTCATCTTTGATCCGTCTAAAAATAAACTCCTAGATTGGAGGACACGGTATAACATTATAGAAGGAATAGCTCGAGGGTTGCTATATCTACACAGAGATTCTAGACTAAGAATTATTCATAGAGATTTGAAGGCGAGTAATGTTTTGTTAGACGAGGAATTGAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGCGTTGGAGATGATCCGGTCAATACTAGCAGGATTGTTGGAACTTATGGGTATATGTCTCCTGAATATGCAATGCAAGGATTATTTTCTGAGAAAACAGATGTTTTTAGCTTCGGTGTTTTGATACTAGAGATTGTTACCGGGAGAAGAAACTCAAGTTTCTACGACAATGAGCATGCTCTAAGCCTTTTAGGATTCGTGTGGATAAAATGGAGGGAAGACAATATTTTATCTGTCATAGATGAAGGAATATATGATCCTAATCATCATAATTACATTTTAAGATACATACATATAGGACTTTTGTGTGTACAAGAAATTGCTGTAGATAGACCAACTATGGCTGAAGTAATTTCTATGCTTAACAGTGAAGCTGTATTACCTTCTCCTTCAAGTAAACCTGCATTCATCTTGATGAAGAATATGTTGAATTCAAAGTGGCCTGAAGAATGTCAAACTGGTAGTTCCATCAACAATGTCAGTATGACAGAAATTTGTGGCAGATAG 2529 0.3788 MVFSNYAYLLSVIFILFCYLLRVSIGIDTITSSQFIKDPENLVSKDGNFTLGFFSPKNSTNRYVGIWWKSQSTIIWVANRNQPLNDSNGIVAIYGDGNLVVLNGHKQVIWSSNVSNIASNTNSQFSEFGNLVLLESITRNILWQSIEQPSDTLLPSMKLSINKRTGKSVKLRSWKSPSDPSVGNFSSSTIERQHILEVIVWNETRICWRSGPWNGGVFTGIQAMTMAYFFGFQAGDDGEGNTVIYYTIQNDDDFFIYHLNSKGILEETRWDDTKKEVRVTWTSRDSECDVYGICGTFATCNSLSSPICSCLRGFEPRNIGEWNRKNWTGGCIRRTPLQCERVDNKTASRKEDGFLKLQIIKVPDFAEGLTVTSDICRNLCLKNCSCLAYSHNDGIGCMSWTENLLDIQQLQIGGLDLYVRVAYTELDRGRNMTIVIISTVIIGILIIVICAYIIWRRRSNHPAKLWHFVKSARKKNNKSFQLFNKGGSQEHYTTDNEIGESPQVKLQELLIFDFEKLATATNNFHLSNKLGHGGFGTVYKGKLQDGQEIAVKRLSRASGQGLEEFMNEVVVICKLQHRNLVRLLGCCIEGDEKMLMYEYMPNKSLDAFIFDPSKNKLLDWRTRYNIIEGIARGLLYLHRDSRLRIIHRDLKASNVLLDEELNPKISDFGMARIFGVGDDPVNTSRIVGTYGYMSPEYAMQGLFSEKTDVFSFGVLILEIVTGRRNSSFYDNEHALSLLGFVWIKWREDNILSVIDEGIYDPNHHNYILRYIHIGLLCVQEIAVDRPTMAEVISMLNSEAVLPSPSSKPAFILMKNMLNSKWPEECQTGSSINNVSMTEICGR 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01199 842 Pfam PAN-like domain 349 407 IPR003609 -
Trre13g01199 842 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Trre13g01199 842 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Trre13g01199 842 CDD STKc_IRAK 530 796 - -
Trre13g01199 842 ProSitePatterns Protein kinases ATP-binding region signature. 530 552 IPR017441 GO:0005524
Trre13g01199 842 SMART serkin_6 524 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01199 842 ProSiteProfiles Protein kinase domain profile. 524 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01199 842 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 180 IPR036426 -
Trre13g01199 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Trre13g01199 842 Gene3D Phosphorylase Kinase; domain 1 499 599 - -
Trre13g01199 842 Gene3D - 23 146 IPR036426 -
Trre13g01199 842 CDD EGF_CA 287 318 - -
Trre13g01199 842 SUPERFAMILY Protein kinase-like (PK-like) 509 818 IPR011009 -
Trre13g01199 842 SMART blect_4 33 149 IPR001480 -
Trre13g01199 842 PIRSF SRK 1 842 IPR024171 GO:0004674
Trre13g01199 842 Gene3D Transferase(Phosphotransferase) domain 1 600 802 - -
Trre13g01199 842 CDD PAN_AP_plant 335 422 - -
Trre13g01199 842 CDD B_lectin 33 149 IPR001480 -
Trre13g01199 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Trre13g01199 842 FunFam receptor-like serine/threonine-protein kinase SD1-8 495 599 - -
Trre13g01199 842 Pfam Protein tyrosine and serine/threonine kinase 525 795 IPR001245 GO:0004672|GO:0006468
Trre13g01199 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 600 803 - -
Trre13g01199 842 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 786 - -
Trre13g01199 842 Pfam D-mannose binding lectin 73 175 IPR001480 -
Trre13g01199 842 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Trre13g01199 842 SMART ntp_6 349 421 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01199 Trre-Chr13 9452148 9455267 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01199 424 837 Receptor kinase-like Gene Family AT4G05200 47.952 1.25e-125 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre13g01199 PK_Tyr_Ser-Thr 9.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01199 - - tpra:123892366 1595.87