Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01197 ATGGATTTCAGCTACAGTGCATATTTGATCTCTGTTTTGTTCATTTTGTTACAAGTTAGTGTTGCTATAGACACCATCACATCATCTCAATTCATTAAGGACCCTGAAACACTAATATCCAAAGATGGTAACTTCACCTTTGGATTCTTTAGCCCTATAAATTCTACAAACCGCTACGTTGGAATTTGGTGGAAGCTTCAATCTACAACCATATGGGTGGCAAACAGAAACCAACCACTGAATGATTCTAATGGGATTGTCACAATATCTGAAGATGGAAACCTTGTGGTATTAAATGGACAGAATCGAGTCATTTGGTCATCAAATGTTTCCAACATAGCATCCAATAGAAGTTGTCAGTTTTCAGACTTTGGTAACCTTGTCCTGTTGGAGAGTGCAACTGGAAACATCTTATGGCAGAGTATTCAGCATCCTTCGGATACATTACTGCCTGGCATGAAACTTTCAATCAACAAAAGAACTGGTAAGAGTAAAAACCTCAATTCATGGGAAAGCCCTTCTGACCCATTTGTTGGCAACTTCTCTTGTAGTACTGTTGAACGTCTACATATAATTCAAGTGTTCATTTTGAATGGTACTCGTCCATATTGGCGCAGTGGTCCTTGGAATGGCGAGATCTTCACTGGGATACAGAGAATGACAGAAGAATATTTTTTTGGTTTTCGAGGAGGTGATGATGGAGAAGGGAATACTAACATATATTATACAATAGAAAATGATGTGGAATTTCATATCTATCACCTGAATTCGCAAGGCAAATTAGAAGAAACTTGGTGGGATGATGAAAAGAAAGAAATGCAAGTTACATGGACAAGCCAAGAATCAGAGTGTGATGTTTATGGTATATGTGGGGCATTTGCAAGCTGTAATTCACTGAGCTCACCAATATGTAGCTGTTTGAGAGGATTTCAACCCCGAAATTTACAAGAATGGAATATTCATAACTGGACCGGTGGGTGTGTTAGGAGGACACCTTTGCAGTGTGAAAGGGTCAAGAATAAAAACACAAGCACAAAGGAAGATGGGTATTTGAAACTACAAATGGTTAAAGTTCCAGATTTTGCTGAAGGTTTAGCTGTTACAGCAGACATATGCAGAAGCCTATGTTTAGAGAATTGCTCTTGCCTTGCATATTCTCATGAGACTGTGATTGGCTGTATGTCTTGGACTGCGAATCTACTTGACATACAACAACTCGAAATTGGAGGACTTGATCTATATGTTCGCGTAGCATATGCAGAACTTGATCAAGGGAGAAACAAGACAATCATCATTGTAAGTACAGTGATTGTTGGAACTCTCATAGTTGTCTTTTTTGCATATATAATCTGGAGAAGGACATCAAACCACCCAGCTAAACTGTGGCTTTTTACTAAATCAGCAAGGAAAAAGAACAACAAAGCTTTCCAACGTCTTAATAAAGGCGGATCACCAGAAGGATATGCTAGTGACAATGTAATTGGAGAAATGTCCCAAGTTAAACTACAAGAGCTATTAATATTTGATTTTGAGAAGCTTGCAACGGCCACAAACAACTTCCACTTATCCAACAAACTTGGACAGGGTGGTTTTGGTCCCGTATACAAGGGGAAACTACAAGATGGTCAGGAAATAGCTGTTAAAAGACTCTCCAGAGCATCTGGACAAGGGCTGGAGGAATTCATGAATGAAGTAGTGGTGATTTGTAAGCTTCAACACCGCAATCTTGTAAGACTTCTTGGTTGCTGTATTGAAGGCGATGAGAAGATGTTGATGTATGAGTATATGCCAAACAAAAGTTTGGATGCATTCATCTTTGATCCATCAAAAAATAAACTCATAGATTGGAGGACACGAATATTTGGAGGGGGAGAAGATCAGGCCAATACTAACAGGATTGTTGGAACTTATGGCTATATGTCTCCTGAATATGCAATGCAAGGATTATTTTCAGAGAAGTCAGATGTTTTTAGCTTCGGTGTTTTGATACTAGAGATTGTTACTGGGAGAAGGAACTCAAGTTTTTATGACAATGAGCATGCTCTGAGCCTTTTAGGATCTGTGTGGATAAAATGGAGAGAAGACAATATTTTATCTTTCATAGATCAAGGAATATATGATCCTTGTCATCAAAATTACATTTTAAGGTACATACATATAGGACTTTTGTGTGTTCAAGAACTTGCTGTAGACAGGCCCACTATGGCTGCAGTAATTTCTATGCTTAACAATGAAGCTGCATTACTTCCATCTCCTAGTAAGCCTGCATTTATCCGGATGAAGAATATGTTGAATCCAAATGGACCTGAAGAATTTCAAAGTGGTAGTTCCACCAATAATGTCAGTATGACAGATATCTATGGCAGGTAG 2370 0.3852 MDFSYSAYLISVLFILLQVSVAIDTITSSQFIKDPETLISKDGNFTFGFFSPINSTNRYVGIWWKLQSTTIWVANRNQPLNDSNGIVTISEDGNLVVLNGQNRVIWSSNVSNIASNRSCQFSDFGNLVLLESATGNILWQSIQHPSDTLLPGMKLSINKRTGKSKNLNSWESPSDPFVGNFSCSTVERLHIIQVFILNGTRPYWRSGPWNGEIFTGIQRMTEEYFFGFRGGDDGEGNTNIYYTIENDVEFHIYHLNSQGKLEETWWDDEKKEMQVTWTSQESECDVYGICGAFASCNSLSSPICSCLRGFQPRNLQEWNIHNWTGGCVRRTPLQCERVKNKNTSTKEDGYLKLQMVKVPDFAEGLAVTADICRSLCLENCSCLAYSHETVIGCMSWTANLLDIQQLEIGGLDLYVRVAYAELDQGRNKTIIIVSTVIVGTLIVVFFAYIIWRRTSNHPAKLWLFTKSARKKNNKAFQRLNKGGSPEGYASDNVIGEMSQVKLQELLIFDFEKLATATNNFHLSNKLGQGGFGPVYKGKLQDGQEIAVKRLSRASGQGLEEFMNEVVVICKLQHRNLVRLLGCCIEGDEKMLMYEYMPNKSLDAFIFDPSKNKLIDWRTRIFGGGEDQANTNRIVGTYGYMSPEYAMQGLFSEKSDVFSFGVLILEIVTGRRNSSFYDNEHALSLLGSVWIKWREDNILSFIDQGIYDPCHQNYILRYIHIGLLCVQELAVDRPTMAAVISMLNNEAALLPSPSKPAFIRMKNMLNPNGPEEFQSGSSTNNVSMTDIYGR 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01197 789 Pfam D-mannose binding lectin 69 170 IPR001480 -
Trre13g01197 789 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 142 - -
Trre13g01197 789 FunFam receptor-like serine/threonine-protein kinase SD1-8 493 595 - -
Trre13g01197 789 CDD B_lectin 29 145 IPR001480 -
Trre13g01197 789 PIRSF SRK 619 789 IPR024171 GO:0004674
Trre13g01197 789 PIRSF SRK 2 620 IPR024171 GO:0004674
Trre13g01197 789 Gene3D Transferase(Phosphotransferase) domain 1 599 749 - -
Trre13g01197 789 MobiDBLite consensus disorder prediction 768 789 - -
Trre13g01197 789 Gene3D - 18 143 IPR036426 -
Trre13g01197 789 SUPERFAMILY alpha-D-mannose-specific plant lectins 61 176 IPR036426 -
Trre13g01197 789 SMART ntp_6 345 417 IPR003609 -
Trre13g01197 789 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 623 747 - -
Trre13g01197 789 Pfam PAN-like domain 345 403 IPR003609 -
Trre13g01197 789 SMART blect_4 29 145 IPR001480 -
Trre13g01197 789 Gene3D Phosphorylase Kinase; domain 1 493 595 - -
Trre13g01197 789 Pfam Protein tyrosine and serine/threonine kinase 521 612 IPR001245 GO:0004672|GO:0006468
Trre13g01197 789 Pfam Protein tyrosine and serine/threonine kinase 636 742 IPR001245 GO:0004672|GO:0006468
Trre13g01197 789 ProSiteProfiles Bulb-type lectin domain profile. 23 142 IPR001480 -
Trre13g01197 789 ProSiteProfiles PAN/Apple domain profile. 335 418 IPR003609 -
Trre13g01197 789 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 733 - -
Trre13g01197 789 SUPERFAMILY Protein kinase-like (PK-like) 507 767 IPR011009 -
Trre13g01197 789 ProSiteProfiles Protein kinase domain profile. 520 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01197 789 CDD PAN_AP_plant 331 418 - -
Trre13g01197 789 Pfam S-locus glycoprotein domain 204 313 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01197 Trre-Chr13 9435803 9439206 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01197 420 784 Receptor kinase-like Gene Family AT4G05200 38.406 1.67e-84 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre13g01197 PK_Tyr_Ser-Thr 6.5e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01197 - - tpra:123892366 1274.61